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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTTACCTATCAGTGAACTTGATTCCTGGCTGAAGACCCCATCAATTTACGTCATTGATTGCTCTGCGGCTGGGATGATTGTGAATTTCTTCATTGAGgtatccactcaaaaccatgttattaaataccatataataaaactgcaaatgtattgttactgactttgtcttttttgtaatttggatgccaaatttgttactggacttgttattgataag

Basic information

species Glycine max
transcript GLYMA18G44210.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 5
TCCCTTACCTATCAGTGAACTTGATTCCTGGCTGAAGACCCCATCAATTTACGTCATTGATTGCTCTGCGGCTGGGATGATTGTGAATTTCTTCATTGAGgtatccactcaaaaccatgttattaaata---ccatataat-aaaactgcaaatg--tattgttactgactttgtcttt---tttgtaatttggatgccaaat-ttgttactggacttgttattgataag
|||  | || || | ||| |||||||| ||||||||||| || |||||||||||  |||||||||| ||| |||| || ||||||||    ||  | ||||||| |         |   |||  | ||    |  | |  |  ||  || |  |    ||  ||  ||   |||| |||   |||||   | |  || | ||| ||  ||  |   ||  | |   | ||
TCCACTTCCAATTACTGATCTTGATTCATGGCTGAAGACACCTTCAATTTACGTTTTTGATTGCTCAGCGTCTGGAATTATTGTGAAAGCTTTTCTAGAGgtatgctacatgcttctaattaacatatgtttctctgtgctcgaagatgaaggtcatcatgatttatgggcttgtttttgtttttgttcctggattgtctaatattcataacgacttttgtttacttcag

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 5
TCCCTTACCTATCAGTGAACTTGATTCCTGGCTGAAGACCCCATCAATTTACGTCATTGATTGCTCTGCGGCTGGGATGATTGTGAATTTCTTCATTGAGgtatccactcaaaaccatgtta-ttaaataccatataataaaactgcaaatgtattgttactgactttgtcttttttgtaatttggatgccaaatttgttactggacttgttattgataag
|||||| || ||||||||||||||||||||| ||||||| || || || || ||  | || |||||||| ||| |||||||| |||||  |||   |||||||       | |||||  | | ||| | | || ||       |||   | || | |     || | |||  |||| ||  |    | |   |     ||  |  |||  |||  |  |  
TCCCTTGCCAATCAGTGAACTTGATTCCTGGTTGAAGACACCCTCCATCTATGTTTTCGACTGCTCTGCTGCTAGGATGATTCTGAATGCCTTTGCTGAGgtaaa-ggaaacaaccacttcacttatagaacacatctc----ctgtcga-gtttaggactcgagtctgtaattttcgt--tccataagttgataaaattcatatactctttac-gccag-

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 5
TCCCTTACCTATCAGTGAACTTGATTCCTGGCTGAAGACCCCATCAATTTACGTCATTGATTGCTCTGCGGCTGGGATGATTGTGAATTTCTTCATTGAGgtatccactcaaaaccatgttattaaatacc--atataataa------aactgcaaatgtattgttactgactttgtcttttttgtaatttggatgccaaatttgttactggacttgttattgataag----
 ||||| || ||||| || || ||||||||| ||||||| || ||||| || ||  ||||||||||||| |||||||||||||| |||  |||||| ||||||| ||       |  |  | |||||| |   || |  |||       | |     |||| || | ||    |||   |  || |  | ||  |  |    || | |   || | |||  |  |  |    
CCCCTTGCCAATCAGCGACCTGGATTCCTGGTTGAAGACACCGTCAATATATGTTTTTGATTGCTCTGCTGCTGGGATGATTGTCAATGCCTTCATAGAGgtattcaacagtgccttttctgttaaatgcttaattttttaatgtggtgattttggttgtaatgatgctagaattgatatcattattctctgattctctggattttaataagattggttgatcttctggcag