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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTGTCAAGAGCTTCTAGCATTGTGATGTTGATTGCATATGTAGTCTACATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggtttcttaaattatgaaaatggttaattaaattgcttatagtatcttagaagtaattaattaattaacaagctgaattgttcaactgtggacacacattaattaaattgcttatatcatgaattgttcagg

Basic information

species Glycine max
transcript GLYMA18G43000.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10234257|gb|BE803145.1|BE803145
EST:     CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAANAACAAGCTGTGATTGGATTAT
genomic: CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|193645888|gb|FK593873.1|FK593873
EST:     TTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: TTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|207684228|gb|GD664579.1|GD664579
EST:     CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|120530398|gb|EH258531.1|EH258531
EST:     CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|208069183|gb|GD870001.1|GD870001
EST:     TTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: TTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|26047871|gb|CA784524.1|CA784524
EST:     CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|208066695|gb|GD863554.1|GD863554
EST:     CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|208165342|gb|GD964450.1|GD964450
EST:     CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTTGTAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATT
genomic: CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGT-G-AGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATT
EST: gi|26048877|gb|CA785330.1|CA785330
EST:     CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|193525030|gb|FK482831.1|FK482831
EST:     GCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: GCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|6913524|gb|AW395054.1|AW395054
EST:     GTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: GTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|208166460|gb|GD965526.1|GD965526
EST:     CAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: CAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|207694981|gb|GD677064.1|GD677064
EST:     CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
EST: gi|193667048|gb|FK612548.1|FK612548
EST:     CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAA
genomic: CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAA
EST: gi|6952300|gb|AW424368.1|AW424368
EST:     CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATG                         AGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT
genomic: CATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggt ... attgttcaggAGGGTGAGGATGGTGAGGACGGTGAAGAAGAACAAGCTGTGATTGGATTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACTTGTCAAGAGCTTCTAGCATTGTGATGTTGATTGCATATGTAGTCTACATTGTCTTTCAACTGTGGACACACAGGCAGTTATTTGAAGCCGAAGATGtaagctaggtttcttaaattatgaaaatggttaattaaattgcttatagtatcttagaagtaattaattaattaacaagctgaattgttcaactgtggacacacattaattaaattgcttatatcatgaattgttcagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG