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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAGgttaccccaaattatagtatcagaagttctaatggcaaatattacctgttcatgtctgaatatctacttttggattcacag

Basic information

species Glycine max
transcript GLYMA18G42950.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G42950.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G51870.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAGgttaccccaaat----tatag---------tatcagaa----gttctaatggcaaatattacctgttcatgtctgaatatcta-cttttggattcacag-
|||||  | ||  ||||||||||||| ||||||||||| |||||||||| ||| ||||| |       |    |||||         |||  | |    || |||| |  |||||  |    ||  | |   | | | || ||  | |    | |  
GTGATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTATGAGAGTTACAAGgtgagtttgtgtcatctatagcttattggctattgggattatgtactaaagagaaatagaaatgattgttataaaattctgtagctacttgtcctagaaa

upper sequence: GLYMA18G42950.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 4
GTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAGgtta------ccccaaattatagtatcag-----aagttctaatggcaaatattacctgttcatgtctga---atatctacttttggattcacag------------
||||| ||| |  ||||||||||||| |||||||| ||||||||||| | ||| ||||| |      | |||  ||  || ||||      | ||| | ||     || | |    ||  ||| |||   ||    | |||| | || |||             
GTGATACGTATCATACCTTACAGTGCCGTCCAGCTGTTTGCTTATGAAACTTACAAGgtaatggtggcgccatctttaagcatcatttagcatgttgttata-tggatctcaatgattagtgtttgagacattctgattttttgttttacacatgaatttctag

upper sequence: GLYMA18G42950.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S52_69V6.2 (Physcomitrella patens), 5'ss of exon 6
GTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAGgttac--cccaaattatagtatcagaagt-tctaatggcaaatattacctgttcatgtctgaatatctacttttggattcacag------------------------------------------------------------------------
||  |||||||  ||||||||||||| || || ||||||||||||||| |||| ||||| ||   ||  |||  | || |   | | |||    |||       | ||| | ||  ||  | | |   |      | || |                                                                        
GTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAGgtaacattcctcattg-attaccttgattatctggaagcagtcgg-gcgtgt-cttgggtgggtttttgtctcgcagattactgaagtgatcatgtgccagtctgtgttgatagatgtatttctgatatccagtatgcggtgtctttgggtcccag