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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGTgtaagttttattcaggttacgatttttctgaaaatatttaccattttagattgcgtgtcacttctacttagaatcattttgatatgatgctgtgaagtcagaactgctctatatgttaaatcatgtattgcttatggctgatcttgtttagtctccag

Basic information

species Glycine max
transcript GLYMA18G42540.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G477503_T01 (Zea mays), 5'ss of exon 4
--------------------------GTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGTgtaagtt--ttattcaggttac-------gatttttctgaaaatatttaccattttagattgcgtgtcacttctacttagaatcattttgatatgatgctgtgaagtcagaactgctctatatgttaaatcatgtattgcttatggctgatcttgtttagtctccag
                          ||||||||||||||    ||||| || ||  |  |||| ||  | |||||||||||||| |||||||| ||||||||||||   |||  |  |||          |||| ||| ||| |   |  | || |||||   | ||| | | | | |     ||||   | |  ||| |                                                                  
ATGACTAAAGTTCATTACTCTTTCAGGTTTTTGGAGCTCTAGCTATTGCCAAGCTACTCGGTGTGCCCCTAGTCATGTCCTATCACACCCATGTTCCAGTgtaagttgactatgaactttattgcaccaagttttactgcaaacagacagaagttcagatt---tttcattgccattgaatcatatttctttttcttgcag------------------------------------------------------------------

upper sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 5
GTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGTgtaagttttattcaggttacgatttttctgaaaatatttaccattttagattgcgtgtcacttctacttagaatcattttgatatgatgctgtgaagtcagaactgctctatatgttaaatcatgtattgcttatggctgatcttgtttagtctccag
|| ||||| |||||  | ||||||||||| |||||||||||||| || ||||| ||||| |||||||| ||||||| |||||  ||| | || | || || |||| |  |||       ||||  |   | |  |||  |  |  |  ||| || ||    ||  | |||  || |  |    |                                                
GTCTTTGGTGCTCTCTTTATTGCAAAACTATTGTGTGTTCCTATAGTGATGTCTTATCACACCCATGTTCCAGTgtgagtttacttctgctttc-atcttcctgagataattc------ttagcatttatat-gctttaatctgcacccatattaattgagtg--gagaatccacatgtttatt------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494796|gb|EH222963.1|EH222963
EST:     AAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGT                         GTACTTTCCAAGATATACC
genomic: AAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGTgtaagtttta ... tagtctccagGTACATTCCAAGATATACC
EST: gi|7924596|gb|AW830622.1|AW830622
EST:     AAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGT                         GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGAT
genomic: AAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGTgtaagtttta ... tagtctccagGTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGAT