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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGAAAAAGTCTCTGTTGGTGCTTCTGGTGCTCTTTTTGGCTTACTAGGAGGCATGCTTTCAGAACTCCTTACTAACTGGTCATTGTATGAAAAAAAGgtgccttattaaattattcatatttgaaatgtgaatatcacaaaaggaagagatgtgctcttgaaagcaatctattaatttgatttagattttcttgtcatgtgcag

Basic information

species Glycine max
transcript GLYMA18G39860.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G39860.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g00470.t01 (Vitis vinifera), 5'ss of exon 3
TGGGGAAAAAGTCTCTGTTGGTGCTTCTGGTGCTCTTTTTGGCTTACTAGGAGGCATGCTTTCAGAACTCCTTACTAACTGGTCATTGTATGAAAAAAAGgtgccttattaaattattcatat--ttgaaatgtgaatatcacaaaaggaagagatgtgctcttgaaagcaatctattaatttgatttagattttcttgtcatgtgcag
   ||| ||  ||||||||||||| || ||||| || ||||| ||||| |||||||||||||| || ||| ||||||| |||||| | ||||  || ||||| | |        |  ||| ||   | ||  |||||| ||           || | |  | |||     || |  || || | |     ||||  |     ||| |||
CCAGGAGAACATCTCTGTTGGTGCCTCCGGTGCACTCTTTGGATTACTTGGAGGCATGCTTTCTGAGCTCATTACTAATTGGTCAATATATGCTAATAAGgtacttatgagtggttctcagatgacttaatcgtgaatctct------agctagttttatttttg-----aacccgtttatcttac---aatttattgagtgtgttcag