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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCACGTTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgtgttagcttataaatttgtcttattttgcttcatgttaacttctgatcgtaaaagtgaataatttgtttctgaagttgtctcatgctattatatttcctttctatgctgaaagcacagtgattttgtatgcag

Basic information

species Glycine max
transcript GLYMA18G33140.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G33140.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g32680.4 (Oryza sativa), 5'ss of exon 4
GATCCACGTTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgtgtta-gcttataaatttgtcttattttgcttcatgttaacttc-tgatcgtaaaagtgaataatttgtttctgaagttgtctcatgctattatatttcctttctatgctgaaagcacagtgattttgtatgcag
   || ||| ||||||| ||||| || |||||  |||||||||| |  ||||| ||||||||||| ||  | |||||||| |||||||| |||||  | |||     |  | |   | ||||||  | |  || ||  |       |||| |   | | ||||| | || |  |  | ||       |    |||                                                
---CCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctcataatcataaatg-gacacatatttatcgggaagaactgcactaacctaaaactaaacatgtgctctcccc--ccgcaaaatgtag---------------------------------------------

upper sequence: GLYMA18G33140.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G48640.1 (Arabidopsis thaliana), 5'ss of exon 5
GATCCACGTTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgtgttagcttataaatttgtcttattttgcttcatgttaacttctgatcgtaaaagtgaataatttgtttctgaagttgtctcatgctattatatttcctttctatgctgaaagcacagtgattttgtatgcag
|| || ||  | || ||||  || ||||||||||||||||| ||||| |||||||||| |||||||||  ||  |||||| |||||||| |||| ||| |||||  | | ||    |     ||| |  | |||    |||||  |    ||   | | ||  ||      || ||| |||  |      | |  |     | |  | ||| ||| |                        
GAGCCTCGACTTGTTGCTCTTACGTGCTTGTACCTGGCATCTAAAGCTGAAGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaa--tatcttcttcttctgtttttttatttttcaaatcatgagagtacctccccttcaatatg-----cttttttttgacata--tcgacgacaacggttcttatatctttgcag------------------------

upper sequence: GLYMA18G33140.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0360g00050.t01 (Vitis vinifera), 5'ss of exon 5
GATCCACGTTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgtgttagcttataaatttgtcttattttgcttcatgttaacttctgatcgtaaaagtgaataatttgtttctgaagttgtctcatgctattatatttcctttctatgctgaaagcacagtgattttgtatgcag
||||||||| | || ||||||||  |||||||| ||||  ||||||||||||||||||| ||||||||| | ||||||||||||||| | | ||||||| |||| |  |  |  || |  |   |||   | |  | ||    |||  |    |   |    ||  | | ||| |||          || |     | | | || |  | |                              
GATCCACGTCTTGTGGCTCCAACTAGCTTGTACTTGGCTGCAAAAGCAGAAGAAAGCACTGTGCAGGCTAGACTTCTTGTATTTTACGTCAGAAAATTAAgtaatcacttgttactcagcatgatgttgaactgcggtt----ttagttctccagtcttgtggttgacattttatttaacgtaagaactgagtgcctgacactttccctttgcag--------------------------

upper sequence: GLYMA18G33140.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S18_263V6.1 (Physcomitrella patens), 5'ss of exon 3
GATCCACGTTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgt--aagctgtgttagcttataaatttgtcttattttgcttcatgttaacttctgatcgtaaaagtgaataatttgtttctgaagttgtctcatgctattatatttcctttctatgctgaaagc-acagtgattttgtatgcag
                            |||||||||| || |||||||||||||||||||||||||||  | ||||||| || |||   || ||| |  |   || ||    |    | || | ||||     |     ||   | | |  |||  ||| | ||| ||  ||  || | |  | || |||| || ||  |  |        |  |  | |  | |||  |||||         
---------------------------CTGTACCTGGCCTCCAAAGCAGAAGAAAGCACAGTGCAGGCTAAGATTCTTGTTTTCTACTCAAAGAAAATCCGAGGAACCTTCTCTTATCTCTACACTTgtaagcctgaaactc---tcagccactg--cgttacagtaaacgatgggtattt--atttttctc-tgttacaaagtggtgaacatgagaagcatcctacacagattt---------

upper sequence: GLYMA18G33140.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S427_18V6.1 (Physcomitrella patens), 5'ss of exon 5
GATCCACGTTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAA--TTATgtaagctgtgttagcttataaatttgtct-tattttgcttcatgttaacttctgatcgtaaaagtgaataatttgtttctgaagttgtctcatgctattatatttcctttctatgctgaaagcacagtgattttgtatgcag
                            |||| ||||| || |||||||||||||| ||||||||||||  ||||||||| || | ||  || |||  |   | || ||  |   |  | |  | ||||   |||    ||    | ||   |  |||  ||| ||    | || |   |      |||   |||      | |  ||      ||  || ||   |    | | |  ||    
---------------------------CTGTATCTGGCCTCCAAAGCAGAAGAAAGTACAGTGCAGGCTAAGCTTCTTGTTTTCTGCACGAAGAAAATTCGGGCAACCTTCGCCTGTCTCTTTACTTgtaagtatgaaactctccgctactgtacgataataagaggtggtgatctcgct------ttgctacat------agaggtcagagggatattgtaaa-gctaccaatctacat----