1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATGtaagttctctaagcgccacataatgttttggtgattagctattactaacactcatgatattttctttctcgtttctctaatttgaatctatgttcatttctttgtcgggtcataga
species | Glycine max |
transcript | GLYMA18G32830.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATA TGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGATGAAGGTGCAGTTCCEST: gi|298183231|gb|HO028216.1|HO028216
genomic: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATGtaagttctct ... gggtcatagaTGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCC
EST: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATA TGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCCEST: gi|192334305|gb|FK024404.1|FK024404
genomic: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATGtaagttctct ... gggtcatagaTGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCC
EST: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATA TGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCCEST: gi|207740415|gb|GD715235.1|GD715235
genomic: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATGtaagttctct ... gggtcatagaTGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCC
EST: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATA TGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCCEST: gi|208097536|gb|GD891311.1|GD891311
genomic: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATGtaagttctct ... gggtcatagaTGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCC
EST: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATA TGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCCEST: gi|208187945|gb|GD980991.1|GD980991
genomic: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATGtaagttctct ... gggtcatagaTGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCC
EST: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATA TGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCC
genomic: AAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATGtaagttctct ... gggtcatagaTGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATGtaagttctctaagcgccacataatgttttggtgattagctattactaacactcatgatattttctttctcgtttctctaatttgaatctatgttcatttctttgtcgggtcataga
- - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAG