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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGGAGGAGTTGACCGAAGTGATGTGAAACCCTTACAGATTATTCAGCCTGAAGGTCCAAGTTTTCGTGTTAATGGGCACTTCATTGAATGGCAGAAGGtggttgtttttctaagtatattttccaaaactacatcattatatcatccatattgaggccttccaaaaaaaaaaaaatatatcatccatattgagaattgctaaaactgattgaccatttttgcagt

Basic information

species Glycine max
transcript GLYMA18G20800.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G20800.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 5
-CGGGGAGGAGTTGACCGAAGTGATGTGAAACCCTTACAGATTATTCAGCCTGAAGGTCCAAGTTTTCGTGTTAATGGGCACTTCATTGAATGGCAGAAGGtggttgtttttctaagtatattttccaaaactacatcattatatcatccatattgaggccttccaaaaaaaaaaaaatatatcatccatattgagaattgctaaaactgattgaccatttttgcagt
 || ||||| ||||| |||||||||||||||||||| || || ||||| |||||||| || || ||||||||||||||| ||||  ||||||||||||||||| ||   ||| |  |           ||| ||  | | |  |  ||| |  || |  ||| | | |            ||||||| || || |   ||  ||   || |||| |            
ACGTGGAGGTGTTGATCGAAGTGATGTGAAACCCTTGCAAATCATTCAACCTGAAGGACCTAGCTTTCGTGTTAATGGGTACTTTGTTGAATGGCAGAAGgtgattacctttttggg-----------aaagtaggttactggaaaatctaagttcaa-cctgctatatgg-------cttatcatctattttta---tttttattcctcattggcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393205|gb|EV263080.1|EV263080
EST:     TGAAGGTCCAAGTTTTCGTGTTAATGGGCACTTCATTGAATGGCAGAAGT                         GGAATTTTCGTATTGGATTCACTCCTAGGGAGGGTTTGGTAATTCATTCAG
genomic: TGAAGGTCCAAGTTTTCGTGTTAATGGGCACTTCATTGAATGGCAGAAGGtggttgtttt ... tttttgcagtGGAATTTTCGTATTGGATTCACTCCTAGGGAGGGTTTGGTAATTCATTCAG
EST: gi|151405414|gb|EV275228.1|EV275228
EST:     TGAAGGTCCAAGTTTTCGTGTTAATGGGCACTTCATTGAATGGCAGAAGT                         GGAATTTTCGTATTGGATTCACTCCTAGGGAGGGTTTGGTAATTCATTCAG
genomic: TGAAGGTCCAAGTTTTCGTGTTAATGGGCACTTCATTGAATGGCAGAAGGtggttgtttt ... tttttgcagtGGAATTTTCGTATTGGATTCACTCCTAGGGAGGGTTTGGTAATTCATTCAG