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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGACCAAGAACCAAAGGCTCCTCTCGGTCTCAACCAATGTAAAGAACCCTGCCTATTCTGACACCTTATATGTTGCTTCTCTTATTGGACCTAACACTgtaagccatcattttttcactttgctaatttttaatgattaggtttgagttaatctaaaaaaatattaagattagctttaatggacttgtttgttgtttggccttatttttgttaaagaaacttaaaaaccacaatttcctttgatgtatcttatcatag

Basic information

species Glycine max
transcript GLYMA18G19380.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G19380.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G13420.1 (Arabidopsis thaliana), 5'ss of exon 6
GGGGACCAAGAACCAAAGGCTCCTCTCGGTCTCAACCAATGTAAAGAACCCTGCCTATTCTGACACCTTATATGTTGCTTCTCTTATTGGACCTAACACTgtaagccatcattttttcactttgctaatttttaatgattaggtttgagttaatctaaaaaaatattaagattagctttaatggacttgtttgttgtttggccttatttttgttaaagaaacttaaaaaccacaatttcctttgatgtatcttatcatag
 ||  ||||||| || || || |||| ||  ||||| | |||||||||||| || || ||||||||||||||||| ||| |||| || |||||| |||||||||| ||||  |||||   | || | |  |  |  |  |   ||   | |    |  ||  ||||| |   ||| |||  |||   || || | |                                                                
AGGTGCCAAGAAACAGAGACTTCTCTGGGCATCAACAAGTGTAAAGAACCCAGCTTACTCTGACACCTTATATGTCGCTCCTCTCATCGGACCTGACACTgtaagtcatc--tttttgtttgtgttgaagtcaataggctgtattaacgct---ttggaagtatattca---tagtttttgtgggtgtgatt-tag----------------------------------------------------------------