Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCATTTGGCTGCTGCCTTCCTCCTATGCCATAACATTTCTCATGGGATTAATCTGCATAAAACTCCAGTTTTGCAGTACTTGTATTATCTTGCACAGgttagccatcaggaatattcttttggtcaacctagttattctattgaacaatacagattttgctgctattctgagtttaggtccactgtaatgtagtggg...

Basic information

species Glycine max
transcript GLYMA18G16700.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G16700.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0026g01480.t01 (Vitis vinifera), 5'ss of exon 15
TGATCATTTGGCTGCTGCCTTCCTCCTATGCCATAACATTTCTCATGGGATTAATCTGCATAAAACTCCAGTTTTGCAGTACTTGTATTATCTTGCACAGgttagccatca----ggaatattcttttgg-tcaacctagttattctattgaacaatacag---attttgctgctattctgagtttaggtccactgtaatgtagtggg
 || |||||||||||||| ||||| || |||||||||||||||||||||||||||||||  ||| | || |||||||||||  | ||||||||||| |||||| | | |        | ||||| ||  | |||||  | | |  || |   ||  || ||   ||  || |  | ||||   | ||| |   |||     |      
AGACCATTTGGCTGCTGCATTCCTTCTCTGCCATAACATTTCTCATGGGATTAATCTGCGGAAATCCCCTGTTTTGCAGTATCTCTATTATCTTGCTCAGgtttgactttgcctcaaattattcattgagatcaac--aatgaaactttcatactctagaggtcatcatgatcatgttcttgttgtagatt-gctggcccatc-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23727375|gb|BU761715.1|BU761715
EST:     TTAATCTGCATAAAACTCCAGTTTTGCAGTACTTGTATTATCTTGCACAG                         CTAGGTCTAAATGTGTCTCTCTCTACCGATGATCCTTTGCAAATTCATTTG
genomic: TTAATCTGCATAAAACTCCAGTTTTGCAGTACTTGTATTATCTTGCACAGgttagccatc ... gtttttccagCTAGGTCTAAATGTGTCTCTCTCTACCGATGATCCTTTGCAAATTCATTTG