Sequence
atgc intronic sequence ATGC exonic sequenceTTATGCGGATGGCAGTATATGCTTGGACATTTTACAGAATCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGGtaattgtgattcacttaatatttcagaattgcattaagaccatacttatgctaaaaatgatttgattgtatcctgtacataatttatttaaaatactatt...
Basic information
species | Glycine max |
transcript | GLYMA18G16160.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G16160.3 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G110983_T03 (Zea mays), 5'ss of exon 3
-TTATGCGGATGGCAGTATATGCTTGGACATTTTACAGAATCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGGtaattgtgattcacttaatatttcagaattgcattaagaccatacttatgctaaaaatgatttgattgtatcctgt-acataatt-tatttaaaatactatt
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TTTATGCTGATGGAAGCATATGCTTAGATATCCTGCAGAATCAGTGGAGTCCGATATATGATGTAGCTGCGATACTCACGTCAATCCAGgta-caaccatacaagaaatcttttatttcttacaagagattattgtttttccaacatt--tgtaacttttgcttgttatacagtaacattcaactttgcagt
upper sequence: GLYMA18G16160.3 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G110983_T02 (Zea mays), 5'ss of exon 4
TTATGCGGATGGCAGTATATGCTTGGACATTTTACAGAATCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGGtaattgtgattcacttaatatttcagaattgcattaagaccatacttatgctaaaaatgatttgattgtatcctgt-acataatt-tatttaaaatactatt
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--------------------------ATATCCTGCAGAATCAGTGGAGTCCGATATATGATGTAGCTGCGATACTCACGTCAATCCAGgta-caaccatacaagaaatcttttatttcttacaagagattattgtttttccaacatt--tgtaacttttgcttgttatacagtaacattcaactttgcagt
upper sequence: GLYMA18G16160.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0026g01770.t01 (Vitis vinifera), 5'ss of exon 6
-TTATGCGGATGGCAGTATATGCTTGGACATTTTACAGAATCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGGtaat---tgtgattcacttaatatttcagaattgcattaagaccatacttatgctaaaaatgatttgattgtatcctgtacataatttatttaaaatactatt
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TTTATGCGGATGGAAGCATTTGCTTAGACATTCTACAAAATCAGTGGAGTCCAATTTATGATGTAGCTGCCATACTTACATCCATCCAGgtattggatatgttcatattattgtttggatgttgcatcaa--ctgagaacatgatatttaaaacatgaaagaatgctg-atttgacctatgtttt-tgcctttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19346345|gb|BM891225.1|BM891225EST: TCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGT CATTTGAATTCAGTCTATGCTATGAATCAGGGAAACCTAAACTTTGATGTG
genomic: TCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGGtaattgtgat ... gttttgcagtCATTTGAATTCAGTCTATGCTATGAATCAGGGAAACCTAAACTTTGATGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATGCGGATGGCAGTATATGCTTGGACATTTTACAGAATCAGTGGAGCCCTATTTATGACGTAGCTGCAATTCTTACCTCAATCCAGGtaattgtgattcacttaatatttcagaattgcattaagaccatacttatgctaaaaatgatttgattgtatcctgtacataatttatttaaaatactatt
- - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC