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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGCTGGAATGCTTTACAAATCACTGAGGACTCGGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTgtatgtttccacttttctttgaaatctccttgttgccttggctgtcacgttcttactctatatattcatgaaagtgtttaagtaatctgacttttttcattttctcag

Basic information

species Glycine max
transcript GLYMA18G12920.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G12920.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 5
TATTGGCTGGAATGCTTTACAAATCACTGAGGACTCGGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTgtatgtttccacttt-tctttgaaatctccttgttgccttggctgtcacgttcttactctatatattcatgaaagtgtttaagtaatctgacttttttcattttctcag
 ||||||||||||||||| ||| |     |||| || | ||||||||||||||||||||| |  |||||||||||||| || || ||  | ||||| || |||||  || |  |  ||| |    |||   |||    || | | || |   | || | |||    |  |  | |  | | | ||||   | |||  | ||||    ||
CATTGGCTGGAATGCTTTGCAAGTTGGGAAGGATTCTGAAATTTTGGATGATGTTGGAAACCGTCATGTCTATTTTGTTCATTCGTACAGGGCCATTCCAgtatggatctaaataatctcttctttctttctgtcattttcg-tatctctaccatattgtattctcttctacatgcatgtga-taattatagtttcataatttctatag

upper sequence: GLYMA18G12920.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0090g00810.t01 (Vitis vinifera), 5'ss of exon 4
TATTGGCTGGAATGCTTTACAAATCACTGAGGACTCGGGAATTTTGGATGATGTTGGAAATCACCATGTCTATTTTGTGCACTCTTATCGTGCCATGCCTgtatgtttccacttttctttgaaatctccttgttgccttggctgtcacgttcttactctatatattcatgaaagtgtttaagtaatctgacttttttcattttctcag---
|||||| |||||||||||||| |      | ||||| | ||||||||||||| ||||||| |  |||||||||||||| || ||||| ||||||||||| |||||||| | |||   | |     ||| |   |   |   ||  |   |||||   ||     | ||||||  |       | |||| | ||  |  |||||  | |   
TATTGGATGGAATGCTTTACACACAGTGAAAGACTCTGAAATTTTGGATGATATTGGAAAGCGTCATGTCTATTTTGTTCATTCTTACCGTGCCATGCCAgtatgttttcccttgcttgttg---ctcttccatatttcaactaactatttctttgact-----tgcatgaagttccc----tgatctaagttcctctatttttcctgtag