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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGAAAGGATCCTGTAGACTACTCACGTCCTGCTAATGAGGtatgaaatacttaatcagtgctttcagctttctgcttctaacttctttgttttccatgaaaagtgatcaccactgtttgtatggtgaatgggattttgattatcctcatggcagg

Basic information

species Glycine max
transcript GLYMA18G12830.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G12830.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
-TTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGAAAGGATCCTGTAGACTACTCACGTCCTGCTAATGAGGtatgaaatacttaatcagtgctttcagctttctgcttctaacttctttgttttccatgaaaagtgatcaccactgtttgtatggtga-atgggattttgattatcctcatggcagg
 ||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||||||||| |||||| || |||||    || ||||||||||||||||    |   |   || ||| ||  |       |||||  || ||||   |   | |  || |   ||    ||||      | |  |||  |   || | || |||||||||| 
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatt---tctctgtccaatgcattgggg-----acttctttctccttt-cgtcgaaaggtaaatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208128573|gb|GD928405.1|GD928405
EST:     AGCAGTTACTGGAAAGGGTCCTGTAGACTACTCACGTCCTGCTAATGAGG                         TGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGG
genomic: AGCAGTTACTGGAAAGGATCCTGTAGACTACTCACGTCCTGCTAATGAGGtatgaaatac ... tcatggcaggTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGG
EST: gi|58018096|gb|CX704838.1|CX704838
EST:     AGCAGTTACTGGAAAGGATCCTGTAGACTACTCACGTCCTGCTAATGAGG                         TGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGG
genomic: AGCAGTTACTGGAAAGGATCCTGTAGACTACTCACGTCCTGCTAATGAGGtatgaaatac ... tcatggcaggTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGG