1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGCCTTGGTGTCATTGGTGCATTGGTGAAGgtattttttccttgctcattaagttgttggatgcaaatatcacaagaaaacaaaattatatggcaatcaatattgaaaaaacttatcaccaaaatccttg...
species | Glycine max |
transcript | GLYMA18G10400.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGTCATTGGTGCATTGGTGAAG GTTGATGATACAGAAGTTATAAGTTTCNNNCTTTCAACAGAGATAATTNNNEST: gi|27426250|gb|CA937770.1|CA937770
genomic: GTGTCATTGGTGCATTGGTGAAGgtattttttc ... tattcaccagGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATAATTCCT
EST: TTGAGTACTTGAGGCTTACCAGCCTTGGTGTCATTGGTGCATTGGTGAAG GTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATAATTCCTEST: gi|20075320|gb|BQ094111.1|BQ094111
genomic: TTGAGTACTTGAGGCTTACCAGCCTTGGTGTCATTGGTGCATTGGTGAAGgtattttttc ... tattcaccagGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATAATTCCT
EST: TTGAGTACTTGAGGCTTACCAGCCTTGGTGTCATTGGTGCATTGGTGAAG GTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATAATTCCTEST: gi|19053276|gb|BM731943.1|BM731943
genomic: TTGAGTACTTGAGGCTTACCAGCCTTGGTGTCATTGGTGCATTGGTGAAGgtattttttc ... tattcaccagGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATAATTCCT
EST: TTGAGTACTTGAGGCTTACCAGCCTTGGTGTCATTGGTGCATTGGTGAAG GTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATAATTCCT
genomic: TTGAGTACTTGAGGCTTACCAGCCTTGGTGTCATTGGTGCATTGGTGAAGgtattttttc ... tattcaccagGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATAATTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTCTATATCTGTATCCCTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGCCTTGGTGTCATTGGTGCATTGGTGAAGgtattttttccttgctcattaagttgttggatgcaaatatcacaagaaaacaaaattatatggcaatcaatattgaaaaaacttatcaccaaaatccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaaa