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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCCCAAAGTACCAAAATCCCTGCGGATATATGAAGCTCATGTTGGAATTAGTGGTTCTGAGCCAAAAATATCCTCATTCAATGATTTCACAGACAAGgtttcccccctcatttctttgggttggaatttgtaactaatcaattatacatatcttccatgtctatatattgtaatgggctccattgaatttttacttttattatatgcacaatgcag

Basic information

species Glycine max
transcript GLYMA18G10380.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10380.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0090g00920.t01 (Vitis vinifera), 5'ss of exon 5
GAGTCCCAAAGTACCAAAATCCCTGCGGATATATGAAGCTCATGTTGGAATTAGTGGTTCTGAGCCAAAAATATCCTCATTCAATGATTTCACAGACAAGgtttcccccctcatttctttgggttggaatttgtaactaatcaattatacatatcttccatgtctatatattgtaatgggctccattgaatttttacttttattatatgcacaatgcag
| |||| || || ||||| ||  |||| |||||||||   ||||||||||||||||| || |||| ||| |||||||| |||||||| || || || || ||  ||  | | ||| ||||        |||| |  ||       | || |||   ||||    | ||| || |  || | || |||   ||  |  ||  |                 
GCGTCCAAATGTGCCAAAGTCTTTGCGCATATATGAATGCCATGTTGGAATTAGTGGATCAGAGCAAAAGATATCCTCTTTCAATGAATTTACTGAGAATgta-ccttcttgattgctttat------atttctttcttcctttctgta-atactatccacaagt-tattttcttttgtgttctatt---ttcctcattacag----------------