Sequence
atgc intronic sequence ATGC exonic sequenceCAATTGCTACGCGTTATGGACAAGTTGAAGCATGGCGAAGCTGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGACATGTTAAGAAGGGtacgtctcaggaactttcatattttattagcagttttacccctctttcctaaaatgctaaatggcttaagattgacatactgtttctgaagttgcgaata...
Basic information
species | Glycine max |
transcript | GLYMA18G08180.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 5
----CAATTGCTACGCGTTATGGACAAGTTGAAGCATGGCGAAGCTGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGACATGTTAAGAAGGGtacgtctcaggaacttt-catattttattagcagttt--tacccctctttcctaaaatgctaaatggcttaagattgacatactgtttctgaagttgcgaata
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AGAGCATTTATTGTCTTGTATGGAGAAATTGAGGCAAGGGCAAGCTGTAGATATTCCAAAATATGATTTTAAAACTTACAGGAGCAGTG---TTTTCAGAAGGgtaccaccttccctctcagcatcactcattatcatattgttacttgatgtttataaatttgagattcctttttcattttctcactgcctctt--tctgtaac--
upper sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 5
CAATTGCTACGCGTTATGGACAAGTTGAAGCATGGCGAAGCTGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGACATGTTAAGAAGGGtacgtctcaggaactttcatattttattagcagttttacccctctttcctaaaatgctaaatggc-ttaagattgacata---ctgtttctgaagttgcgaata----
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--ACTATTATGCGCCATGGAGAAGTTGAAGCATGGGCAAGCAGTAGATATTCCAAAATATGACTTCAAGAGTTACAAAAACAATG-TGTTTCCAGCGAGAAGGgt---aaaatctttcttacacatgggtctggaaaatgcatctttc--aatatatcaaatgtcattgttttctatgcaaacttgttgctgaatatccagagactgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192329234|gb|FK020153.1|FK020153EST: TCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGACATGTTAAGAAGGG TGAACCCTTCAGATGTTATAATTTTAGAAGGCATCCTTGTTTTCCATGATC
genomic: TCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGACATGTTAAGAAGGGtacgtctcag ... tgttttcaggTGAACCCTTCAGATGTTATAATTTTAGAAGGCATCCTTGTTTTCCATGATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATTGCTACGCGTTATGGACAAGTTGAAGCATGGCGAAGCTGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGACATGTTAAGAAGGGtacgtctcaggaactttcatattttattagcagttttacccctctttcctaaaatgctaaatggcttaagattgacatactgtttctgaagttgcgaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acccctc