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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTTCGTAGAATTGTATGTTGGCATGGGTGCCTCTCGTGTAAGAGATCTATTTGCAAGGGCTAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGgtataaaaatatatattcttttgttgtgtggaatcacttggttcaacatatattatttaatattaaactgatcagcatttcttttggtatgcag

Basic information

species Glycine max
transcript GLYMA18G07280.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G47060.1 (Arabidopsis thaliana), 5'ss of exon 5
TGAGTTCGTAGAATTGTATGTTGGCATGGGTGCCTCTCGTGTAAGAGATCTATTTGCAAGGGCTAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGgtataaaaatatatattcttttgttgtgtggaatcacttggttcaacatatat-tatttaatattaaactgatcagcatttcttttggtatgcag
|||||| |||||  ||||||| || ||||||||||| |||||||| ||||| |||||| |||| || | ||||||||| || || || ||||||||||||||   | ||||  || ||  |    |  |     |  |   || ||| | |    || | | |  | | |  ||    |  || |     | |||
TGAGTTTGTAGAGCTGTATGTCGGTATGGGTGCCTCACGTGTAAGGGATCTTTTTGCACGGGCCAAGAAGGAAGCTCCATCGATTATATTTATTGATGAGgtt--agaataggtagtcgatgtcagattacctccggtatattaaacctctgggcatcttaaacaagattt-tctatttgcctctcatgctccag

upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 5
TGAGTTCGTAGAATTGTATGTTGGCATGGGTGCCTCTCGTGTAAGAGATCTATTTGCAAGGGCTAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGgtataaaaatatatattcttttgttgtgtggaatcacttggttcaacatatattatttaatattaaactgatcagcatttcttttggtatgcag
|||||| |||||  |||||||||||||||||||||| || ||||| |||||||||||| | || || | ||| |||||||| || || ||||| |||||||| | || | | |     | ||    |      |   |||  || |  || ||  ||||     |||   ||  |  |||||||   | | |||
TGAGTTTGTAGAGCTGTATGTTGGCATGGGTGCCTCACGCGTAAGGGATCTATTTGCACGAGCCAAGAAGGAGGCTCCGTCAATTATATTTATAGATGAGgtgtgaatacaaaatcagtgttagattacctgctactttgtatcgatgtaaatc-ttta----caaatgtatttgtgtttctttcaattt-cag

upper sequence: GLYMA18G07280.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 5
TGAGTTCGTAGAATTGTATGTTGGCATGGGTGCCTCTCGTGTAAGAGATCTATTTGCAAGGGCTAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGgtataaaaatatatattcttttgttgtgtggaatcacttggttcaacatatattatttaatattaaactgatcagcat-ttcttttggtatgcag
|||||| ||||||||||||||||||||||| || || || || |||||||| |||||| |||| || |  ||||| || || |||||||| ||||||||||| || ||   |  | | |||||||||||  | |||    ||||| ||| |     ||  |  |    || |   ||| || || |  |  ||||
TGAGTTTGTAGAATTGTATGTTGGCATGGGAGCTTCCCGCGTGAGAGATCTCTTTGCACGGGCAAAGAAAGAAGCACCATCAATAATCTTCATTGATGAGgt-tagaaccgtggaat-ttttgttgtgt--attcat---gttcagcattttgagcttcctggtgcgttgttagtcatgtttttcttcttcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305728|gb|FG995698.1|FG995698
EST:     TATTTGCAAGGGCTAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAG                         ATAGATGCTGTGGCTAAAAGTCGTGATGGCAAATTTCGCATTGTCAGCAAT
genomic: TATTTGCAAGGGCTAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGgtataaaaat ... tggtatgcagATAGATGCTGTGGCTAAAAGTCGTGATGGCAAATTTCGCATTGTCAGCAAT