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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTCTATAGGTTATTTTCTAGCAGATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATAcgtaagttgaaaagatattaaattttcttgccatgtttaatatattagatgatattagacattgtatttattttgcacattgaactcagtatccaggttttctgtttaggaagcggtaaactaactccgttcttggtattta

Basic information

species Glycine max
transcript GLYMA18G05520.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G05520.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g08450.t01 (Vitis vinifera), 5'ss of exon 5
GATTTCTATAGGTTATTTTCTAGCAGATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATAcgtaagttgaaaagatattaaattttcttgccatgtttaatat---attagatgatattagacattgtatttattttgcacattgaactcagtatccaggttttctgtttaggaagcggtaaactaactccgttcttggtattta
 || || || |||||||||||  ||||  ||||||||||||||||| |||| ||||||||||| |||||||| || ||||||   ||||| | |  ||  ||     |||||  ||||   ||||  |  | || || ||| | |||  ||   |  |||       ||||| |  |    ||                                     
-ATCTCCATTGGTTATTTTCTGTCAGACTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGCGGTCTGGAGTATgtaagt-acaaagagaatgcatgctca----atgttagatatccaattatttactgttggagattatttttccttcaaagtttgtgac--atatcctgaataaa-gtc------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701169|gb|BW652202.1|BW652202
EST:     GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATA                         CGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATG
genomic: GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATAcgtaagttga ... ttggtatttaGGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATG
EST: gi|26045687|gb|CA783193.1|CA783193
EST:     GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATA                         CGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATG
genomic: GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATAcgtaagttga ... ttggtatttaGGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATG
EST: gi|151412353|gb|EV282165.1|EV282165
EST:     GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATA                         CGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATG
genomic: GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATAcgtaagttga ... ttggtatttaGGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATG