Sequence
atgc intronic sequence ATGC exonic sequenceGATGATACTCAGACTGCATTGCCATGTCTTGTCACACTAAATCCTGGTGTAAGGATAGCAAGTGTAGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGgtattgactttattatgaactatttgtcaacctaggtctaaaattttatctgttattttcgtatatgatgtgataatcttttggttgaagcagaactttttgtgttatggaagatcagttatgcaatctaagacatgtcattgattgtaattttctgtgagtttcag
Basic information
species | Glycine max |
transcript | GLYMA18G03870.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G03870.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G302245_T01 (Zea mays), 5'ss of exon 3
GATGATACTCAGACTGCATTGCCATGTCTTGTCACACTAAATCCTGGTGTAAGGATAGCAAGTGTAGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGgtattgactttattatgaactatttgtcaacctaggtctaaaattttatctgttattttcgtatatgatgtgataatcttttggttgaagcagaactttttgtgttatggaagatcagttatgcaatctaagacatgtcattgattgtaattttctgtgagtttcag
|| || | || | ||| || ||| |||| ||| | ||| | || || | |||| |||||||||||||||||| ||||| |||||| ||||||||| | || ||| ||||| | || | ||||| |||| || | || | | | ||| | ||||| |
GACGAAAGTCTTTCCGCACCCCCTTGTGTTGTGACATTTAATACAGGAGTGAAAATAGTGTCTGTAGCTGCTGGTGGTCGTCATACATTAGCACTGTCAGgtaat--ctgcatt----------tgtcattatgacactgacattttccctgt-atggatatttactgactaaaatatgtttcttcgaagcttcag-----------------------------------------------------------------------
upper sequence: GLYMA18G03870.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 5
GATGATACTCAGACTGCATTGCCATGTCTTGTCACACTAAATCCTGGTGTAAGGATAGCAAGTGTAGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGgta--ttgactttattatgaactatttgtcaacctaggtctaaaattttatctgttattttcgtatatgatgtgataatctt---ttggttgaagcagaactt---tttgtgttatggaagatcagttatgcaatctaagacatgtcattgattgtaat-tttctgtgagtttcag
||||| |||| | ||||||||||| || ||||| || ||||||||||| ||||| || | ||| |||||||| || || ||||| |||||||||||||||| | | || || | | || ||| |||| | || | ||| || | || | | | || |||| | || | || || | | | | | ||||||| || || || || || | | | || || || | || | ||||||||
GATGAAACTCTCTCAGCATTGCCATGCCTGGTCACGCTGAATCCTGGTGTGAGGATTGCTAATGTTGCTGCTGGCGGGCGTCATACTTTAGCATTGTCAGgtaaatccatgaaatcttggattgtt-gtc--cctaagcctcagttttaattcatagttctt-tttctgttgtggttatgcaacataggctggtactcagtatgactagaagccatggaagttctattttgtaaagcaacaaacttaatgttttctattgttcccccaagtttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11688812|gb|BF596488.1|BF596488EST: AAGGATAGCAAGTGTAGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAG ATATAGGACAGGTGTGGGGTTGGGGCTATGGTGGTGAAGGGCAGCTCGGTT
genomic: AAGGATAGCAAGTGTAGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGgtattgactt ... tgagtttcagATATAGGACAGGTGTGGGGTTGGGGCTATGGTGGTGAAGGGCAGCTTGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGATACTCAGACTGCATTGCCATGTCTTGTCACACTAAATCCTGGTGTAAGGATAGCAAGTGTAGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGgtattgactttattatgaactatttgtcaacctaggtctaaaattttatctgttattttcgtatatgatgtgataatcttttggttgaagcagaactttttgtgttatggaagatcagttatgcaatctaagacatgtcattgattgtaattttctgtgagtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG