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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCAGACAACAAAATCGGGAGATTTATATCAGAAGCTGTAGGTTCCCTTCCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagattatgctttgtgttagtggtttattactgggatttcttattttgatgaaaattgtgaaatgagatggaacagatttttgtttcttatatttattggcttgtcaggcaagtcttctcagcttgccgtccatagttttattgtgctgacaggggtgtttcatccatttca

Basic information

species Glycine max
transcript GLYMA18G03340.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192333945|gb|FK024758.1|FK024758
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|254317274|gb|GR826219.1|GR826219
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|208339064|gb|GE139288.1|GE139288
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCT
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCT
EST: gi|193516845|gb|FK472973.1|FK472973
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|214003981|gb|DB985250.1|DB985250
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|209700663|gb|BW670452.1|BW670452
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|21675436|gb|BQ627787.1|BQ627787
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|193699661|gb|FK640354.1|FK640354
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|209728076|gb|BW655309.1|BW655309
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|254317273|gb|GR826218.1|GR826218
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|193404924|gb|FK375451.1|FK375451
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|193645433|gb|FK590835.1|FK590835
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|193318580|gb|FK287152.1|FK287152
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|31466038|gb|CD408066.1|CD408066
EST:     CCCGAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACTAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|209713286|gb|BW684373.1|BW684373
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|209718437|gb|BW666249.1|BW666249
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|209705150|gb|BW667782.1|BW667782
EST:     CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCA                         GGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAG
EST: gi|151393162|gb|EV263037.1|EV263037
EST:     CCCAAATTGTCCCCATCAGTTTT-GATAAGCTTGTGAATGACAGTTTGCA                         G-ATCACTTGCTTTTGCTG
genomic: CCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAggtaagatta ... atccatttcaGGATCACTTGCTTTTGCTG