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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTTGATTGGTATTGCTCCAGGTTCCCCTGAGgtatatctctagtgcctgttatagatagtaaataggttatcatgtttcttgctccagttatttaggtttacaattgttaagatattaaaactgaaaacct...

Basic information

species Glycine max
transcript GLYMA18G02960.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 5
GAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTTGATTGGTATTGCTCCAGGTTCCCCTGAGgtatatctctagtgcctgttatagatagtaaataggttatcatg-tttcttgctccagttatttaggtttacaattgttaag---atattaaaactgaaaacct
 || || || |||||||| ||||||||||| || || ||| |||||||||| |||||||| ||| | ||  | ||||| ||||| || ||| | || ||||||| | | |  |      |   ||||   || ||| |   ||| | |   | || |  |  ||  |   | | |    |||   | ||  |   |  |||  |
TAGGACGGCTAATTTGGCCAACAATCAAATTATCAACTATCGATGTGATCCATCTGAGAAGTGGCTTGTGCTTATTGGAATTGCACCTGGTGCTCCAGAGgtatgtttgt--taataagtgccgatat--aacaggctgcaatggtgtaaagatcaaaatccttttgggcatagtgtaaaagactacatatattttcgaaagtt

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 5
GAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTTGATTGGTATTGCTCCAGGTTCCCCTGAGgtatatctctagtgcctgttatagatagtaaataggttatcatg-tttcttgctccagttatttaggtttacaattgttaag---atattaaaactgaaaacct
 || || || |||||||| ||||||||||| || || ||| |||||||||| |||||||| ||| | ||  | ||||| ||||| || ||| | || ||||||| | | |  |      |   ||||    | ||| |   ||| | |   | || |  |  ||  |   | | |    |||   | ||  |   |  |||  |
TAGGACGGCTAATTTGGCCAACAATCAAATTATCAACTATCGATGTGATCCATCTGAGAAGTGGCTTGTGCTTATTGGAATTGCACCTGGTGCTCCAGAGgtatgtttgt--taataagtgccgatat--gacaggctgcaatggtgtaaagatcaaaatccttttgggcatagtgtaaaagactacatatattttcgaaagtt

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 5
GAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTTGATTGGTATTGCTCCAGGTTCCCCTGAGgtatatctctagtgcc-tgttatagatagtaaataggttatcatgtttcttgctccagttatttaggtttacaattgttaagatattaaaactgaaaacct------
 ||||| || |||||||||||||||||||| || || ||||  ||   ||||  |||||| ||||||||||||||||| ||||| || || || |||||||||    ||  |  ||  ||  ||| | | || || |  |||||        |  |||| || | | | ||   |||     || ||   | |   | |||      
TAGAACGGCTAATTTGGCAAACAATCAAATTATAAACTATAAGTGCTCTCCTAATGAGAAGTGGTTGGTCTTGATTGGAATTGCCCCTGGCTCTCCTGAGgtagggttcctgcaccacgtattaggttg-aattaagacatcata------acggcagtcatgttg-tatatttttgacggaatcttgtcattattatcctctgtag

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ24508 (Selaginella moellendorffii), 5'ss of exon 5
GAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTTGATTGGTATTGCTCCAGGTTCCCCTGAGgtat--atctct---agtgcctgttatagatagtaaataggttatcatgtttcttgctccagttatttaggtttacaattgttaagatattaaaactgaaaacct
 ||||| || ||  || |    |||||||| ||||| ||  | ||||||||||||||||| ||| | ||  |||| || ||||||||||| || ||||||||||  || |||   |  |  | || ||| ||  ||| |   | |  |                                                         
TAGAACGGCTAACCTGTCGGGAAATCAAATTATTAACTACCGCTGTGATCCTTCTGAGAAGTGGCTAGTTCTGATAGGCATTGCTCCAGGCTCTCCTGAGgtatccatttcttgaaaagtttcttgtagctaacaaagaaactcttttag-------------------------------------------------------