Sequence
atgc intronic sequence ATGC exonic sequenceCTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTGAACAAgtgagtttttctttcttctttcatattgaacatcgtctactttctgattctgttcccttgccttgttccccactctcttttttttgcttttaaaattttt...
Basic information
species | Glycine max |
transcript | GLYMA18G01960.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G01960.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G856084_T01 (Zea mays), 5'ss of exon 5
CTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTGAACAAgtgagtt----------------------tttctttcttctttcatattgaacat--cgtctactttctgattctgttcccttgccttgttccc--cactctcttttttttgcttttaaaattttt--------------------------------------------------
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CCTATCGGAAGCTTGCTAGGAGCTATCATCCAGATGTAAACAAgtgagttggctattgcaatagagaatcacttttcagctactatcaccatcatcattttgttgcttttcgggtgcttatagccagctgtactgcctgtatattcttctttgtacattagacatctctctcatttagtcagtcaaataatgaaagtatctatttatgatctattttag
upper sequence: GLYMA18G01960.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G39960.1 (Arabidopsis thaliana), 5'ss of exon 5
CTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTGAACAAgtgagtttt---tctttcttctttcatattgaacatcgtctactt-tctgattctgttcccttgccttgttccccactctcttttttttgctt-ttaaaattttt
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CTTATCGGAAGCTCGCTAGGAGTTATCATCCAGATGTGAACAAgtaagtgaagggtttagtttactttgtatccagtataaggtcttcgtctgtttatattatttaccttcctgcatcaagattggtgtgtttcttgttacaa-----
upper sequence: GLYMA18G01960.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0324g00040.t01 (Vitis vinifera), 5'ss of exon 8
CTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTGAACAAgtgagtttttctttcttctttcatattgaacatcgtctactttctgattctgttcccttgcc-ttgttccccactctcttttttttgcttttaaaattttt
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CTTATCGAAAGCTTGCCAGGAGTTATCATCCAGATGTGAACAAgtgagttgaaaagccatttctta-atcatatataattaatatcatcagggttgtccattccaattgcttgatgttatagcttgttacttctgagaagtgaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21994326|gb|BQ785854.1|BQ785854EST: CTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTGAACAA AGAACCTGATGCAGAACAGAAATTTAAAGAACTTANTAATGCATATGAA
genomic: CTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTGAACAAgtgagttttt ... tctgctgcagAGAACCTGATGCAGAACAGAAATTTAAAGAACTTAGTAATGCATATGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTGAACAAgtgagtttttctttcttctttcatattgaacatcgtctactttctgattctgttcccttgccttgttccccactctcttttttttgcttttaaaattttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccactc