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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttggaaagctcctgtggttgagctaacctctctccctctccccctctttttctctaggcattctcaaataatcatattatgatttcag

Basic information

species Glycine max
transcript GLYMA18G01280.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01280.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0010g02670.t01 (Vitis vinifera), 5'ss of exon 5
GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttggaaagctcctgtggttgagctaacctctctccctctccccctctttttctctaggcattctcaaataatca---tattatgatttcag
||||||||||| ||||||||||||||| |||| |||||||||||||||  |||| ||                 | |||||  |   | |    ||   |   |  |  | || || | |||      || |||| ||||||
GCAGTTGATGCATGGGGAACAGTTGATATATTGATAAACAATGCAGgtt-gttgaaac---------------ttgacctccttttttttgtagcttactagtttcaaactttgtccactaactgatctactatggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017082|gb|CX703824.1|CX703824
EST:     GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAG                         GAATAACAAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
genomic: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttgga ... atgatttcagGAATAACAAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
EST: gi|213600146|gb|DB964310.1|DB964310
EST:     GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAG                         GAATAACGAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
genomic: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttgga ... atgatttcagGAATAACAAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
EST: gi|7042369|gb|AW472263.1|AW472263
EST:     GCAGGTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAA                         GAATGACAAGAGATGGTTTA
genomic: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttgga ... atgatttcagGAATAACAAGAGATGGTTTA
EST: gi|192334676|gb|FK025223.1|FK025223
EST:     GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAC                         GAATAACAAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAG-
genomic: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttgga ... atgatttcagGAATAACAAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
EST: gi|192296853|gb|FG990229.1|FG990229
EST:     GCAGTGGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAG                         GAATAACAAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG
genomic: GCAGTTGATGCTTGGGGAACAGTTGATGTATTAATAAACAATGCAGgtaagttgga ... atgatttcagGAATAACAAGAGATGGTTTATTAATGAGAATGAAGAAATCTCAATGGCAGG