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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGgtaagtgatggcttttgatgttgaaaaccatatgcatgcatatgttaaactcctattttaaattaaattattacagtcatcattatttcattttgctgtc...

Basic information

species Glycine max
transcript GLYMA18G00720.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00720.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G14210.2 (Arabidopsis thaliana), 5'ss of exon 10
ATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGgtaagtgatggcttttgatgttgaaaaccatatgcatgcatatgttaaactcctattttaaattaaattattacagtcatcattatttcattttgctgtc
|||| |||||||| ||| ||||||||  ||||||||  || || || ||| ||| |||||||||||||||||| || ||||| || |||||||| ||||||| |||||   | ||   |           | |       ||||| | | ||  |  ||| ||  |  | |||         | |  | || |||| |  
ATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACTTCAAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATATATGgttagtgaaaccgttatctcccttgttttcttttggccattatgtgagaatcg-agattacatgcaggtctta--actgctgtgaactaatattgcag--

upper sequence: GLYMA18G00720.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 10
ATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGgtaagtg--atggcttttgatgttgaaaaccatatgcatgcatatgttaaactcctattttaaattaaattattacagtcatcattatttcattttgctgtc
|||| |||||||||||| | || |   ||||||||| ||||||||| |||  ||||||||||||||||||||| || ||||| || |||||||| ||||||| |||   || | ||| ||||||    | | |||  |    ||     |  |    |   || |  ||  | || |  ||| |  ||   |||  |   | 
ATATCCTGAAGCTTCTTTTGCCGGGAGACTGGAAAGAGATTCCATACTTCAGGAGATTGGATAAATTAGTTGGAGTTCCAGTGATCAATGTTCATATATGgttagttctatagttttggatgttctctagcttatttaatgttaaaactatttgtgctagaaagtctaagaaatagaa-cataagaataa-attaggaaatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400218|gb|EV270032.1|EV270032
EST:     CAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATG                         GTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAG
genomic: CAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGgtaagtgatg ... gcatttgcagGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAG