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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACAGAGATCATAGACCAGATTGACCGAGATGTCAATCGTACTCATCCAGATATACACTTCTTCTCTGGTGATTCTCTTTTTGCAAAATCTAATCAGgttcttcctctatttatttttattttcgaattcatgccaactcggtcctttttcttgccattttgactttcaacttttccggattttgcag

Basic information

species Glycine max
transcript GLYMA18G00430.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00430.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G13730.2 (Arabidopsis thaliana), 5'ss of exon 5
GACACAGAGATCATAGACCAGATTGACCGAGATGTCAATCGTACTCATCCAGATATACACTTCTTCTCTGGTGATTCTCTTTTTGCAAAATCTAATCAGgttcttcctctatttatttttattttcgaa--ttcatgccaactcggtcct---ttttcttgccattttgactttcaacttttccggattttgcag------
||||||||  |  | || || || || || ||||| |  ||||||||||||||||| ||||| |||||||| |||||     ||||||||||||||||||||     |   |||   | || |||  |   ||   |   | |    | |   | | ||     ||||   | ||   || | |   |||||||       
GACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGgttgggtgttggttttgctatagtttaaagcctttgggatgattaaaacatcagtatactgatagtttttcttgtctttttatacatgttttgcatgtctag

upper sequence: GLYMA18G00430.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
GACACAGAGATCATAGACCAGATTGACCGAGATGTCAATCGTACTCATCCAGATATACACTTCTTCTCTGGTGATTCTCTTTTTGCAAAATCTAATCAGgttcttcctctatttatttttattttcgaattcatgccaactcggtcctttttcttgccattttgactttcaacttttccggattttgcag
||||||||||||||||| || ||||||||||||||||| || ||||||||||| ||  ||||||||||||| ||  | |  | ||||||| | ||||||||   |    | ||  ||      |  || || || | |||     || |||        |       | |    |||| |          
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgtatgtgt--tgttacttgaggcatgagacttgatacaaacatcacccatttgaccaaattaaatggatcctgtatttcag----------