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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAGgtcagttgttttcatatatgttttcttctcaacacatgttcattccattttttatgctgctgtgtcaataccatttctgttgtcattagattcttgcgtc...

Basic information

species Glycine max
transcript GLYMA17G37310.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37310.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g00300.t01 (Vitis vinifera), 5'ss of exon 3
GAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAGgtcagttgttttcatatatgttttct-tctcaacacatgttcattccattttttatgctgctgtgtcaataccatttctgttgtcattagattcttgcgtc-
||||||||| ||||| | |||| | |||||||||||||||||| |||| |||||||| ||||| ||| | | || |||||| ||||||||||||||||||||  ||| |||  |||  | |    | |||      ||   ||||  | |   |||     |||||       |  | | || |       || ||  ||  
GAGTGATGGGTATGTCAGAGTTCAAGATTTGCTAAAGCTGAATATGAAAACATTTGCCAATATCCCATTAAGATCGCACACAATTGATGATATTAGGGAGgttggttttttaaatacttttaaaatctctttctctatccccatttaactagctatctgtttgtgtttggctaaaatatattctag--gagttattctgtaa

upper sequence: GLYMA17G37310.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g00280.t01 (Vitis vinifera), 5'ss of exon 3
GAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAGgtcagttgttttcatatatgttttct-tctcaacacatgttcattccattttttatgctgctgtgtcaataccatttctgttgtcattagattcttgcgtc-
||| ||||| ||| | | |||| | |||||||||||||||||| |||| |||||||| ||||| ||| | | || |||||| ||||||||||||||||||||  ||| |||  |||  | |    | |||       |   ||||  | |   |||     |||||       |  | | || |       || ||  ||  
GAGCGATGGGTATATCAGAGTTGAAGATTTGCTAAAGCTGAATATGAAAACATTTGCCAATATCCCATTAAGATCGCACACAATTGATGATATTAGGGAGgttggttttttaaatacttttaaaatctctttctctgtccccatttaactagctatctgtttgtgtttggctaaaatatattctag--gagttattctgtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337235|gb|CO981101.1|CO981101
EST:     CATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAG                         GCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGG
genomic: CATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAGgtcagttgtt ... ttattctcagGCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGG
EST: gi|22525914|gb|BU084725.1|BU084725
EST:     CATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAG                         GCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGG
genomic: CATTTGCTAATATTCCACTGAAATTGCACACTATTGATGATATTAGGGAGgtcagttgtt ... ttattctcagGCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGG