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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCTTGAAggtcagaattgtttcatttctgaattccattgtgttttgagattttggttaatctcaaatgtattgtaccttacccttcatgttggtgta

Basic information

species Glycine max
transcript GLYMA17G37220.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37220.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 5
GGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCTTGAAggtcagaatt-----------gtttcatttctgaattccattgtgttttgaga-ttttggttaatctcaaatgtattgtaccttacccttcatgttggtgta---
 ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||| ||           ||| ||||| | |  |  | | || | ||||| ||||     |  |  ||| |    | ||||    ||     |||| |    
-GGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGgtcagacttacacttggtgtgttgcattt-taagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtag

upper sequence: GLYMA17G37220.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S47_46V6.2 (Physcomitrella patens), 5'ss of exon 5
GGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCTTGAAggt--cagaattgtttcatttctgaattc---cattgtgttttgagattttggttaatct----caaatgtattgtacct---tacccttcatgttggtgta
 |||||  |  | |||||||||||||| ||||| |||||  | |||||  | ||||||||||| ||||| |||||||| ||  |||||||   ||   | ||  |||| |   | |   |||    | |  |  |||||| | |  |    | ||| |||  || ||   |    || | | ||     
-GGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAGgtattaggggttttggatttttctgtgctggcataacctatctattttttggctgactttttgctaatatatcttagctgtgtgaggttaaggctgacac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279081|gb|BI943248.1|BI943248
EST:     ACATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAA                         GGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTT
genomic: ACATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCTTGAAggtcagaatt ... tgttggtgtaGGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTT
EST: gi|192308350|gb|FK001336.1|FK001336
EST:     ACATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAA                         GGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTT
genomic: ACATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCTTGAAggtcagaatt ... tgttggtgtaGGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTT
EST: gi|16281445|gb|BI944491.1|BI944491
EST:     CATTGGTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCCTTGAA                         GGGTGTTTCA-GTGCAATTATTGATAAA
genomic: CATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTC-TTGAAggtcagaatt ... tgttggtgtaGGTTGTTTCAAGTGCAATAATTGATAAA