Sequence
atgc intronic sequence ATGC exonic sequenceGGATTCTTCTTTTCTTTATATGGGAAGATTGTTGGAAGGGTTTGGTGTAGGAATAATATCTTACACggtaattttaaaatgtttttgcttttgctaatgtgggcttaattcagttatgtgtgacacaattattgagtgtttaaacttcaaattcaca
Basic information
species | Glycine max |
transcript | GLYMA17G36950.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G36950.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G160504_T01 (Zea mays), 5'ss of exon 4
GGATTCTTCTTTTCTTTATATGGGAAGATTGTTGGAAGGGTTTGGTGTAGGAATAATATCTTACACggta-attttaaaatgtttttgcttttgctaatgtgggcttaattcagttatg-tgtgacacaattattgagtgtttaaacttcaaattcaca--------
||| | || ||||| ||||||||| ||||| | |||||||||||||| || || ||||| |||||||| | | || ||| | | || | || | | |||| | | ||| | | || | | | | || |
-GATGCCTCATTTCTATATATGGGACGATTGCTTGAAGGGTTTGGTGTCGGCATCATATCCTACACGgtttgtaacagaagatttgttgcatgcttatttcttgcacagaagatttatactttcacaacttagaaaaatggtgcagttgctgtttggaaaagtgaga
upper sequence: GLYMA17G36950.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G19450.1 (Arabidopsis thaliana), 5'ss of exon 5
GGATTCTTCTTTTCTTTATATGGGAAGATTGTTGGAAGGGTTTGGTGTAGGAATAATATCTTACACggtaattttaaaat--gtttttgcttttgctaatgtgggcttaattcagttatgtgtgacacaattattgagtgtttaaacttcaaattcaca
||| ||||||||||||| |||||||||||||| ||||| || || || || || || || || |||||||| ||| | | | || |||| | | || || | || | | ||||| | ||| || | | | || |
-GATACTTCTTTTCTTTACATGGGAAGATTGTTAGAAGGCTTCGGAGTTGGGATTATCTCCTATACGgtaatattagattcaactatttctttgatttcagcaatgtttgtttgga-gtgatcaatataattacacacc-tttgaattgcgattttag-
upper sequence: GLYMA17G36950.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0001g12560.t01 (Vitis vinifera), 5'ss of exon 5
GGATTCTTCTTTTCTTTATATGGGAAGATTGTTGGAAGGGTTTGGTGTAGGAATAATATCTTACACggtaattttaaaatgtttttgcttttgctaatgtgggcttaattcagttatgtgtgacacaattattgagtgtttaaacttcaaattcaca---------
|||| ||| || || || |||||||| ||||||||||| |||||||| |||||||| |||||||||||| ||| | || || ||| | | | | ||| || || || | | | ||| | | | || | ||||
-GATTATTCATTCCTGTACATGGGAAGGTTGTTGGAAGGATTTGGTGTGGGAATAATCTCTTACACGgtacatttgagattttattggctgctccagtttgga--tatttgtgtaaaaagaatctcaaatgctattcaatccaatcttttgttcattactttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19268732|gb|BM884988.1|BM884988EST: TATATGGGAAGATTGTTGGAAGGGTTTGGTGTAGGAATAATATCTTACAC GGTGCCTGTGTACATAGCTGAGATATCACCTCCAAACTTGCNNNNNNNTTT
genomic: TATATGGGAAGATTGTTGGAAGGGTTTGGTGTAGGAATAATATCTTACACggtaatttta ... caaattcacaGGTGCCTGTGTACATAGCTGAGATATCACCTCCAAACTTGCGGGGGGGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATTCTTCTTTTCTTTATATGGGAAGATTGTTGGAAGGGTTTGGTGTAGGAATAATATCTTACACggtaattttaaaatgtttttgcttttgctaatgtgggcttaattcagttatgtgtgacacaattattgagtgtttaaacttcaaattcaca
- - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - TGGAAG