1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAATATGTATTCTGAGCTGCGGGAGGAGGCTCGTGATCATGCACGCTTGCGTAATGCATATTTTGAGCAGgtgggtctttgtttcatgcagtgacggaggagttaatgggaatttgaatgagaatacaatgtaatgatttggctacaacctacacacatcatcgttggct...
species | Glycine max |
transcript | GLYMA17G33510.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGAGGAGGCTCGTGATCATGCACGCTTGCGTAATGCATATTTTGAGCAG GCACGACAAGCCTACCTTATTGGCAACAAGGCCCTTGCAAAGGAGCTAAGTEST: gi|5677930|gb|AI939060.1|AI939060
genomic: GGGAGGAGGCTCGTGATCATGCACGCTTGCGTAATGCATATTTTGAGCAGgtgggtcttt ... taataaacagGCACGACAAGCCTACCTTATTGGCAACAAGGCCCTTGCAAAGGAGCTAAGT
EST: GGGAGGAGGCTCGTGATCATGCACGCTTGCGTAATGCATATTTTGAGCAG GCACGACAAGCCTACCTTATTGGCAACAAGGCCCTTGCAAAGGAGCTAAGTEST: gi|18038847|gb|BM307141.1|BM307141
genomic: GGGAGGAGGCTCGTGATCATGCACGCTTGCGTAATGCATATTTTGAGCAGgtgggtcttt ... taataaacagGCACGACAAGCCTACCTTATTGGCAACAAGGCCCTTGCAAAGGAGCTAAGT
EST: GGCTCGTGATCATGCACGCTTGCGTAATGCATATTTTGAGCAG GCACGACAAGCCTACCTTATTGGCAACAAGGCCCTTGCAAAGGAGCTAAGT
genomic: GGCTCGTGATCATGCACGCTTGCGTAATGCATATTTTGAGCAGgtgggtcttt ... taataaacagGCACGACAAGCCTACCTTATTGGCAACAAGGCCCTTGCAAAGGAGCTAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATATGTATTCTGAGCTGCGGGAGGAGGCTCGTGATCATGCACGCTTGCGTAATGCATATTTTGAGCAGgtgggtctttgtttcatgcagtgacggaggagttaatgggaatttgaatgagaatacaatgtaatgatttggctacaacctacacacatcatcgttggct
- - - - - - - - - - - GGAGGA
- - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG