1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcccatcaaaactagtaattggtacaacacaaaatgtaggaatctataatagaaatcacacattttgtctttgtaccacttagcattatttgattcttatattttttttgtgaacattggaccaatcttaatttgaaaaaagaagcaatgcag
species | Glycine max |
transcript | GLYMA17G32980.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAG GTGATAACTGATGATCGTTGCATGAAATTCAACTCTTTGTCCTTTGGTCAAEST: gi|15000493|gb|BI321307.1|BI321307
genomic: TGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcccat ... agcaatgcagGTGATAACTGATGATCGTTGCATGAAATTCAACTCTTTGTCCTTTGGTCAA
EST: TGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAG GTGATAACTGATGATCGTTGCATGAAATTCAACTCTTTGTCCTTTGGTCAAEST: gi|192323926|gb|FK018647.1|FK018647
genomic: TGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcccat ... agcaatgcagGTGATAACTGATGATCGTTGCATGAAATTCAACTCTTTGTCCTTTGGTCAA
EST: TGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAG GTGATAACTGATGATCGTTGCATGAAATTCAACTCTTTGTCCTTTGGTCAAEST: gi|15814660|gb|BI786935.1|BI786935
genomic: TGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcccat ... agcaatgcagGTGATAACTGATGATCGTTGCATGAAATTCAACTCTTTGTCCTTTGGTCAA
EST: TGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAG GTGATAACTGATGATCGTTGCATGAAATTCAACTCTTTGTCCTTTGGTCAAEST: gi|209698881|gb|BW675811.1|BW675811
genomic: TGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcccat ... agcaatgcagGTGATAACTGATGATCGTTGCATGAAATTCAACTCTTTGTCCTTTGGTCAA
EST: TGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAG GTGATAACTGATGATCGTTGCATGAAATTCAACTCTTTGTCCTTTGGTCAA
genomic: TGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcccat ... agcaatgcagGTGATAACTGATGATCGTTGCATGAAATTCAACTCTTTGTCCTTTGGTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGCCTTGAAGAGCAAGCGCAAAAGgtattcccatcaaaactagtaattggtacaacacaaaatgtaggaatctataatagaaatcacacattttgtctttgtaccacttagcattatttgattcttatattttttttgtgaacattggaccaatcttaatttgaaaaaagaagcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG