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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGAGCACGGGATTTATCTTTTGATGCTTATGGCTATGCTGTTGTTTTCATGTCGAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTGgttgtattcctatacttttactctctcacataaagtgaaattttataccttcttttcttccaagcctgcatattttcttatttatatggtatcgtgtctttttatcag

Basic information

species Glycine max
transcript GLYMA17G32030.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G32030.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 5
GCTGGAGCACGGGATTTATCTTTTGATGCTTATGGCTATGCTGTTGTTTTCATGTCGAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTGgttgtattcctatacttttactctctcacataaagtgaaattttataccttcttttcttccaagcctgcatattttcttatttatatggtatcgtgtctttttatcag
|| || || ||||| || || |||||| ||||||| ||||||||||||||| |||| |||||| | || |||||||| ||||||||||||||||| || ||| | ||| | ||  ||||| | | |    ||||   ||| ||   |      |  | ||  ||   || |  ||||||  ||| ||| |    | |  |||| ||||
GCGGGTGCTCGGGACTTGTCGTTTGATTCTTATGGTTATGCTGTTGTTTTCCTGTCCAACATCACTACGGCAATATACCTTGCAACCATAGCCCGTATAGgtagaatttccat--ttttattttattttttaaa---aaacttccaa------tgacatctcagta-gcttgatttctttcttagatgctgatattttcttttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409838|gb|EV279646.1|EV279646
EST:     CATGTCGAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTG                         GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG
genomic: CATGTCGAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTGgttgtattcc ... tttttatcagGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG
EST: gi|17022709|gb|BM093743.1|BM093743
EST:     CATGTCGAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTG                         GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG
genomic: CATGTCGAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTGgttgtattcc ... tttttatcagGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG