Sequence
atgc intronic sequence ATGC exonic sequenceCAAGTATGTCATCGGGACTTGAAGCTTGAAAACACTTTGCTGGATGGAAGCCCGGCACCTCGTTTAAAGATATGCGATTTTGGGTACTCCAAGgtaaggttttatttttctcacttgatcttcatgttgtgagtttcatgcttccatattattttactgggacttgtttaggttgagtaatacttaactccaa...
Basic information
species | Glycine max |
transcript | GLYMA17G20610.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G20610.4 (Glycine max), 5'ss of exon 5
lower sequence: AT3G50500.1 (Arabidopsis thaliana), 5'ss of exon 5
CAAGTATGTCATCGGGACTTGAAGCTTGAAAACACTTTGCTGGATGGAAGCCCGGCACCTCGTTTAAAGATATGCGATTTTGGGTACTCCAAGgtaaggttttatttttctca---cttgatcttcatgttgtgagtttcatgcttccatattattttactgggacttgtttaggttgagtaatact-taactccaa
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CAAATATGCCATCGGGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGgtactattt-atttctctcaaggtttgttttctgaattctaagttt-atatatgc-tactgtatggccaagcgcagaacagcgggggacatcttgtgattcct-
upper sequence: GLYMA17G20610.4 (Glycine max), 5'ss of exon 5
lower sequence: AT3G50500.2 (Arabidopsis thaliana), 5'ss of exon 5
CAAGTATGTCATCGGGACTTGAAGCTTGAAAACACTTTGCTGGATGGAAGCCCGGCACCTCGTTTAAAGATATGCGATTTTGGGTACTCCAAGgtaaggttttatttttctca---cttgatcttcatgttgtgagttt---catgcttccatattattttactgggacttgtttagg---ttgagtaatacttaactccaa-----------------------------------------------------------------------------------------------------
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--------------GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTT-ATTTCTCTCAAGgtttgttttctgaattctaagtttatatatgctactgtatggccaagcgcagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag
upper sequence: GLYMA17G20610.4 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 5'ss of exon 5
CAAGTATGTCATCGGGACTTGAAGCTTGAAAACACTTTGCTGGATGGAAGCCCGGCACCTCGTTTAAAGATATGCGATTTTGGGTACTCCAAGgtaaggttttatttttctcacttgatcttcatgttgtgagtttcatgcttccatattattttactgggacttgtttaggttgagtaatacttaactccaa--
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CAAATATGTCACCGGGACTTGAAGTTGGAAAATACTTTGTTGGATGGAAGCCCAGCTCCACGTTTGAAGATATGTGATTTTGGGTACTCCAAGgtactaactgtcttcatattcctgcttcagttggtgtcatttctgtgctt--atctcctggaactgggcattccaaggatgagatgaaaattttcttatatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17152867|gb|BM142800.1|BM142800EST: ATGGAAGCCCGGCACCTCGTTTAAAGATATGCGATTTTGGGTACTCCAAG TCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCTGCATAT
genomic: ATGGAAGCCCGGCACCTCGTTTAAAGATATGCGATTTTGGGTACTCCAAGgtaaggtttt ... atttgcccagTCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCTGCATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGTATGTCATCGGGACTTGAAGCTTGAAAACACTTTGCTGGATGGAAGCCCGGCACCTCGTTTAAAGATATGCGATTTTGGGTACTCCAAGgtaaggttttatttttctcacttgatcttcatgttgtgagtttcatgcttccatattattttactgggacttgtttaggttgagtaatacttaactccaa
- - - - - - - - - - - - - - - - - - - - - - TGGAAG