Sequence
atgc intronic sequence ATGC exonic sequenceACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGGAAGCCTATTgtaagtatcaaacacacacatacccttaagagactgcaaaatcctctgttgatgattaggaaattggctttgaatgttcttttcctgcag
Basic information
species | Glycine max |
transcript | GLYMA17G15740.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G15740.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g43470.1 (Oryza sativa), 5'ss of exon 4
ACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGGAAGCCTATTgtaagtatcaaacacacac---atacccttaagagactgcaaaatcctctgttgatgattaggaaattggctttgaatgttct-tttcctgcag
|||||||||||||| || |||||||| |||||||| ||||| || || || || ||||| || || ||||| ||||| ||| | | | || | ||| | | | ||| || | | || | || || ||| | ||| | ||| | ||
ACCATGGCATGGATACTAGATGAATACTCAAAGTTCCATGGCCACTCCCCAGCTGTTGTCACGGGAAAGCCAATTgtgagtttacatgagtcatgaaaaacctatttcatctagacaaactcttcatattttatcattaactttactt--attgtcttatttgatatag
upper sequence: GLYMA17G15740.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G07440.1 (Arabidopsis thaliana), 5'ss of exon 3
-------------------------ACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGGAAGCCTATTgtaag--tatcaaacacacacatacccttaagagactgcaaaatcctctgttgatgattaggaaattggctttgaatgttcttttcctgcag-------------------------------------------------------------------
|||||||| |||||||||||||| || || ||||||||||| ||||| ||||| ||||| || || ||||| |||||||| | | || || || | | |||| |||| || | ||| || ||| || | | |
TCCTGATATGGGCACTAACGCTCAAACCATGGCTTGGATTCTTGATGAGTACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttttaagattttggttatatcattctgagtccggaatctgttgtttattctatggatgttttcttgatttgaattaattcgatgtttctatgtgattaccatagttttgagctttttggtatagaagtaactgttggatcactttggtgtag
upper sequence: GLYMA17G15740.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 2
ACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGGAAGCCTATTgtaagtatcaaacacacacatacccttaagagactgcaaaatcctctgttgatgattaggaaattggctttgaatgttcttttcctgcag
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| | | | | | | | | | | |||| | | | | | | | |||| | ||
ACGATGGCATGGATTCTGGATGAATACTCAAAGTTTCATGGGCATTCACCTGCAGTTGTTACAGGAAAGCCAATTgtaagtatcaaggagggagaggaaaccagtggtcaatatacttcga-attgaaggcca--atgtccacccaaattattctgcattt-tagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298187745|gb|HO031702.1|HO031702EST: GTGACAGGGAAGCCTATT GATCTTGGAGGTTCGTTGGGGAGGGAGGCTGCAACAGGTCTCGGAGTGGTT
genomic: GTGACAGGGAAGCCTATTgtaagtatca ... tttcctgcagGATCTTGGAGGTTCGTTGGGGAGGGAGGCTGCAACAGGTCTCGGAGTGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCATGGCATGGATTCTTGATGAATATTCAAAGTTTCATGGGCATTCACCTGCAGTTGTGACAGGGAAGCCTATTgtaagtatcaaacacacacatacccttaagagactgcaaaatcctctgttgatgattaggaaattggctttgaatgttcttttcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - CTGCAG