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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGTCAATGGAGAAACCCCCTTATACAATGCGTGTACCGAGGAAATCAGAACCTGAATATTATCTTGATCAAGTTTTGCCGATACTCTCGAGAAGACGGgtaatgcctctttttatgattaatacatgtttggaatttcttaactatttgactggaaaatgttttgattctgtgaatgactaccataatgaaatgttagttgttgcttaatgtcagtttagataattctcttttaactttggctgctactgactgacttttgggatattttgcag

Basic information

species Glycine max
transcript GLYMA17G15170.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15170.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 5
GCGGTCAATGGAGAAACCCCCTTATACAATGCGTGTACCGAGGAAATCAGAACCTGAATATTATCTTGATCAAGTTTTGCCGATACTCTCGAGAAGACGGgtaa-------tgcctctttt-tatgattaatacatgtttggaatttcttaactatttgactggaaaatgttttgattctgtgaatgactaccataatgaaatgttagttgttgcttaatgtcagtttagataattctcttttaactttggctgctactgactgacttttgggatattttgcag
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GAGATCAATGGAAAAACCTCCATACACCATGCGTGTACCAAGGAAATCCACTCCTGAATATTATCTGGATCAAGTTCTGCCAATACTCTTGAGGAGACGTgtaaggagatgtggttcatttgtgtgatttatgctttttt--attctattaaat-tttgtacactccttgacttgcctctttgagtt-ttggaaaatagagata--------------------------------------------------------------------------------