1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
TATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAAgtatgtgatctttatactatctccagtgagtgcaagttcatcttgacttccgggaattggttttcaatcctgttttattctgtgttcttgtag
species | Glycine max |
transcript | GLYMA17G14450.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAA GGCCTTTGTTTTCTTTAGTTCACCTATTGCCAGAGAATTGGTTATGGAAATEST: gi|193701416|gb|FK638175.1|FK638175
genomic: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAAgtatgtgatc ... gttcttgtagGGCCTTTGTTTTCTTTAGTTCACCTATTGCCAGAGAATTGGTTATGGAAAT
EST: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAA GGCCTTTGTTTTCTTTAGTTCACCTATTGCCAGAGAATTGGTTATGGAAATEST: gi|193513335|gb|FK470099.1|FK470099
genomic: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAAgtatgtgatc ... gttcttgtagGGCCTTTGTTTTCTTTAGTTCACCTATTGCCAGAGAATTGGTTATGGAAAT
EST: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAA GGCCTTTGTTTTCTTTAGTTCACCTATTGCCAGAGAATTGGTTATGGAAATEST: gi|193510231|gb|FK470243.1|FK470243
genomic: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAAgtatgtgatc ... gttcttgtagGGCCTTTGTTTTCTTTAGTTCACCTATTGCCAGAGAATTGGTTATGGAAAT
EST: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAA GGCCTTTGTTTTCTTTAGTTCACCTATTGCCAGAGAATTGGTTATGGEST: gi|193648232|gb|FK595733.1|FK595733
genomic: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAAgtatgtgatc ... gttcttgtagGGCCTTTGTTTTCTTTAGTTCACCTATTGCCAGAGAATTGGTTATGG
EST: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAA GGCCTTTGTTTTCTTTAGTTCACCTATTGCCAGAGAATTGGTTATGGAAATEST: gi|10237389|gb|BE806277.1|BE806277
genomic: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAAgtatgtgatc ... gttcttgtagGGCCTTTGTTTTCTTTAGTTCACCTATTGCCAGAGAATTGGTTATGGAAAT
EST: ATTATTATGTTCTTGTCAGACATGTCTGGAAGGGAACCCTTGTATAGGAA GGCCTNTGATTGT-TTTAGTTCACCTATTGCCAGAGAATTG
genomic: ATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAAgtatgtgatc ... gttcttgtagGGCCTTTGTTT-TCTTTAGTTCACCTATTGCCAGAGAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTATTATGTTTTTGTCAGACATGTCTGGAAGGAAACCCTTGTATAGGAAgtatgtgatctttatactatctccagtgagtgcaagttcatcttgacttccgggaattggttttcaatcctgttttattctgtgttcttgtag
- - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - AAGGAA