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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAAGGGAGTGAAATTGTGGCTGAGGGTCCAAGGTGCAGTCTTCGTAGTAAAAAGgtgcgtgttaatctgtaatctattctttgatttcagttttgcttgtcagttgtagacttgcatttttatgtatagttgttctttgattaaatcatttttg...

Basic information

species Glycine max
transcript GLYMA17G14240.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G14240.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G11960.1 (Arabidopsis thaliana), 5'ss of exon 5
AAAGAAGGGAGTGAAATTGTGGCTGAGGGTCCAAGGTGCAGTCTTCGTAGTAAAAAGgtg------------cgtgttaatctgtaatctattctttg---atttcagttttgcttgtcagttgtag-acttgcatttttatgtatagttgttctttgatta-aatcatttttg---------
|  || || ||||| ||||||  |||||||||||| |||||||||||||||||||||||              ||    ||   | || |||||||||   ||| |||         | || |  |    |||        | || || |||| |    ||     | |  |||         
ATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGgtaaaaactcttaattgttcggatagctcatatattctttggacattacagaacataacattagattcattgtttgggacaaactctagagatgttatagacttgtggacctccttgattatgcag

upper sequence: GLYMA17G14240.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G22890.1 (Arabidopsis thaliana), 5'ss of exon 5
AAAGAAGGGAGTGAAATTGTGGCTGAGGGTCCAAGGTGCAGTCTTCGTAGTAAAAAGgtgcgtgttaatctgtaatctattctttgatttcagttttgcttgtcagttgtagacttgcatttttatgtatagttgttctttgattaaatcatttttg
|  || || || || ||||||   ||||||||||| |||||||| ||||||||||||||   |   ||  |   ||  ||| ||  || | || ||   | |  || |    | || || | ||   |||     | ||   ||  |          
ATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGTAAAAAGgtaaatag-aacataagattcattgtt-aatattagatta--tagatagatactaattttcagtctt---tatgaacttcctcaaatgtag---------

upper sequence: GLYMA17G14240.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g04710.t01 (Vitis vinifera), 5'ss of exon 5
AAAGAAGGGAGTGAAATTGTGGCTGAGGGTCCAAGGTGCAGTCTTCGTAGTAAAAAGgtgcgtgttaatctgtaatctattctttgatttcagttttgcttgtcagttgtagacttgcat----ttttatgtatagttgttctttgattaaatcatttttg
|  ||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||| || |   ||||||   | | | ||  ||   | | ||    | | | |||  | ||  |    ||| |  | ||   |||   ||  |||| | |   ||
ATTGAAGGAAGTGAAATTGTAGTTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGgtgtgtatctttctgtatcttctccctt--ttcatggtgtgtgctttaat-gtaaccctgtgtgtcatttaagctttaaaagttgcatggctaaaac-tgcatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9259613|gb|BE347760.1|BE347760
EST:     CCAAGGTGCAGTCTTCGTAGTAAAAAG                         GTTTACAGTGACCTATCTGTTGATTATTTGAAGATGTTCCTGCTGAACGTC
genomic: CCAAGGTGCAGTCTTCGTAGTAAAAAGgtgcgtgtta ... ctgcttatagGTTTACAGTGACCTATCTGTTGATTATTTGAAGATGTTCCTGCTGAACGTC