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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagtatttacttgaactagcttctttttgagctatttcttccatacatttcactttgttttatccttaactgataatggcgatacgtgctgtagatctaatatactgtcagactgtgttgtttttgtcagtgggttaggtttctaactgtatctttttatgaatttgcag

Basic information

species Glycine max
transcript GLYMA17G13440.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgta-gtatttacttgaactag-cttctttttgagctatttcttccatacatttcacttt-------gttttatcc--ttaactgataatggc-gatacgtgctgtagatctaatatactgtcagactgtgttgtttttgtcagtgggttaggtttctaactgtatctttttatgaatttgcag-----
|||||||||||||| |||||||| |||||||||| ||| |||||||| || ||||  || || || ||| ||| || |||||| ||||||||||||||||||||||    | || |||    ||  ||| ||      ||| ||     ||  |  | | | |        ||  || |  | | | | | || || ||| | | || | | |  |   |  |   |     |  |   |       |  ||| | ||| ||  | |||||| |    ||| ||        
GGACCAAGCTTATATGATTTTCTGCGGAAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGGTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttccttctgttactcttattaccacactaattagcagatctagattattcttccataaattgcatgctgtcatcagttgatagctgatgctttcttt-gcttcatccttttaggaatacctaatacctaacctgctttgtttg-tttatatatttatcttctctgtaatgtgtgttgcag

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgta-gtatttacttgaactagcttctttttgagctatttcttccatacatttcactt-tgttttatccttaactgataatggcgatacgtgctgtagatctaatatactgtcagactgtgttgtttttgtcagtgggttaggtttcta-----actgtatctttttatgaatttgcag
|||||||||||||| ||||||||  ||||||||||||| |||||||| || ||||  || || || ||| ||| || |||||| ||||||||||||||||||||||    | ||  ||  | || |  | |  ||  ||||       |||||||    || ||  |||||  |     ||    ||    | |    |  ||     || ||   |  |   |  || | |  ||    || | |||| |      ||  | ||| | ||     ||||||
GGACCAAGCTTATATGATTTTCTGAGGAAAAACAATTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGTTTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttctttctattacc--cctcctgcactataatgcatatacattagttttgtgcattatctgtgctgcattgcagcctgtcat-taatccattactcatgcttgtactccagggagtatctaacatcatgtgatgtttttgtatttaccctctctctgtaatgtgttgcag

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G179308_T01 (Zea mays), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgta-gtatttacttgaactagcttctttttgagctatttcttccatacatttcactttgttttatccttaactgataatggcgatacgtgctgtagatctaatatactg-tcagact-gtgttgtttttgtcagtgggttaggttt-----ctaactgtatctttttatgaatttgcag
|||||||||||||| |||||||| ||| |||||| ||| |||||||| || ||||  || || || ||||||| || |||||| ||||||||||||||||||||||    | ||  |   | ||  |   |  ||  ||||       |||||||    ||| ||||    |  |     |     |   | |    |  ||| |   ||||  |||  ||   |   | | |  ||    |  | ||||      | ||  | ||| | ||     ||||||
GGACCAAGCTTATATGATTTTCTGCGGGAAAACAGTTACCGCTCATTCCCAATTGCCCTAGTTCGGGAGATTGCCAAACAACTGTTGGAATGTATAGCATgtgtgtgcacagttcttcctatta--tcgctcctgcactataatgcatatacatta-gtttttttttgcaatatatgtgcagcattgtagcctatcattaatccatattactactcatgcttaaggaatatctaacatcatgggatgtttatgtatttaccctctctctgtaatgtgttgcag

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G24740.1 (Arabidopsis thaliana), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagtatttacttgaactagcttctttttgagctatttcttc-catacatttcactttgttttatccttaactgataatggcgatacgtgctgtagatctaatatactgtcagactgtgttgtttttgtcagtgggttaggtttctaactgtatctttttatgaatttgcag
||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||| ||| |       ||  ||||||    |||  |  ||    |  |||  ||  |||||     | |||||  ||||  | |    |  ||| | |   |   | ||||    | |  ||| |     |  |  |  |||||   ||| | ||||| |   |||||||
GGATCGAGTTTATACGATTTTCTTCGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTCTTGGAATGTGTAGCATgtgtgtagtctttgc-------ag--tcttttcattctacatgctcgtgcatttttatctgagttttgcttgtcactga-gatggttacat---cattagtttttgaa---tttcagctcttttcatttct-----tatggcaattttct---tgtctatttttgt---tttgcag

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagtatttacttgaactagcttctttttgagctatttcttccatacattt-cactttgttttatccttaactgataatggcgatacgtgctgtagatctaatatactgtcagactgtgttgtttttgtcagtgggttaggtttctaactgtatctttttatgaatttgcag
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||||   |||| || ||||| |      ||    || | ||| |  ||||| |  ||| |  || ||| ||  || | ||    ||  | |||                                                                      
GGACCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATgtgtgtagtaaatacttttgctagtttttttttcaa-----tccataatgcgtttgccttttgtgtattccatctcttatactgttga-atgtctactatttgtaa----------------------------------------------------------------------

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S425_6V6.2 (Physcomitrella patens), 5'ss of exon 6
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagtatttact-tgaactagcttctttttgagctatttcttccatacatttcactttgttttatccttaactgat--aatggcgatacgtgctgtagatctaatatactgtcagactgtgttgtttttgtcagtgggttaggtttctaactgtatctttttatgaatttgcag
|| ||||| || |||||||||||||| ||||||||||||||  | ||| |    |||||||| || ||  ||||| | ||||| ||||| | | |||| |||  ||  |||||  | || |     ||     | |  |||   || | |   | |     ||| |  | |||| |||||  |   |  ||| |  ||||                                                                              
GGGCCAAGTTTGTACGATTTTCTTCGAAAAAACAATTATCGACCGTTTTCTGCAGATCTTGTTCGAGATTTTGGCCGCCAACTCTTGGAGTCTGTAGCTTgtaagtcatattttgtatgtatatatttgcaaataatatatgattttcctcagtgtatggatgtgtatttcttatctgattcatcagaaatatgatctgt------------------------------------------------------------------------------

upper sequence: GLYMA17G13440.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S100_121V6.1 (Physcomitrella patens), 5'ss of exon 8
GGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagtatttacttgaactagcttctttttgagctatttcttccatacatttcactttgttttatccttaactga--taatggcgatacgtgctgtagatctaatatactgtcagactgtgttgtttttgtcagtgggttaggtttctaactgtatctttttatgaatttgcag
||||| |||||||||||||| ||||| ||||||||||||||  ||||| |    ||||| || || ||  ||||| | || || ||||| |   |||| ||||      | |||||||    | ||  |  ||||   || | |  | || |||| ||       |    ||  | ||  || ||  | ||  || |||  |     ||   | |    |||  |||||   |                                            
GGACCGAGCTTATACGATTTCCTTCGAAAAAACAATTATCGACCATTTTCTGCAGATCTCGTTCGCGACTTTGGCCGCCAGCTGTTGGAGTCCGTAGCTTgtg------agttacttgtgggatctgttcattga---atatgtcgcgta-atttgacagcagaat-caattggcggaattattgatgttatatgttgtgaaagcggtaatttatgttcctg-attgttgcag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12772886|gb|BG237813.1|BG237813
EST:     ATTGGCAGACAACTATTGGAATGTATAGCAT                         TCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
genomic: ATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
EST: gi|207776596|gb|GD747468.1|GD747468
EST:     CATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCAT                         TCATGCATGACTTGCGCATGATTCATACTGACCT
genomic: CATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGACTTGCGCATGATTCATACTGACCT
EST: gi|13481209|gb|BG510552.1|BG510552
EST:     CAACTATTGGAATGTATAGCAT                         TCATGCATGACTAGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
genomic: CAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
EST: gi|193509579|gb|FK468373.1|FK468373
EST:     CATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCAT                         TCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTAGAAAACATA
genomic: CATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCT-GAAAACATA
EST: gi|17518814|gb|BM187856.1|BM187856
EST:     CATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCAT                         TCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
genomic: CATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
EST: gi|193315306|gb|FK278908.1|FK278908
EST:     CATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCAT                         TCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
genomic: CATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
EST: gi|9986568|gb|BE660676.1|BE660676
EST:     CATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCAT                         TCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC
genomic: CATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATgtgtgtagta ... gaatttgcagTCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATAC