Sequence
atgc intronic sequence ATGC exonic sequenceGGCTGGCAAGAAGGAAGATCTTATGCTGGCTGATAATACAGGCCTGACTCCGGCACAGCTTGCTTCTGATAAGAATCACAGACAAGTTGCTTTTTTCCTTgtaggtctttcataatcaacatagtttgatttgatcagtaatgccatttgaatggcagcttgctttccatcttttcaaaattttccctcccccaatgatt...
Basic information
species | Glycine max |
transcript | GLYMA17G11600.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G11600.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g43680.1 (Oryza sativa), 5'ss of exon 5
GGCTGGCAAGAAGGAAGATCTTATGCTGGCTGATAATACAGGCCTGACTCCGGCACAGCTTGCTTCTGATAAGAATCACAGACAAGTTGCTTTTTTCCTTgtaggtctttcataatcaacatagtttgatttgatcagtaatgccatttgaatggcagcttgctttccatcttttcaa-aattttccctcccccaatgatt-
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GGCTGGCAAAAAGGATGACTTGATGGTGAAGGATAAGACTGGTCTAACTCCAGCACAGCTTGCTGCTGATAAGAGTCATCGGCAAGTTGCATTTTTTCTTgtaagtaacatg-aaccatggcatttctgtttttgtattatagccattcttttg-tagagcccaatgcattaagccattaacagttcatctactagagattc
upper sequence: GLYMA17G11600.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G087806_T01 (Zea mays), 5'ss of exon 5
GGCTGGCAAGAAGGAAGATCTTATGCTGGCTGATAATACAGGCCTGACTCCGGCACAGCTTGCTTCTGATAAGAATCACAGACAAGTTGCTTTTTTCCTTgtaggtctttcataatcaacatagtttgatttgatcagtaatgccatttgaatggcagcttgctttccatcttt----tcaaaattttccctcccccaatgatt--
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GGTTGGCAAAAAGGATGATTTGATGGTGAAAGACAAAACTGGCTTAACTCCAGCACAGCTTGCTGCCGATAAGAATCATCGGCAAGTTGCATTTTTCCTCgtgagt-----aaaattagccatgacatttatattttgtaatat-actcgaagtcctgtttttgcagcatcataagagtcaagaatcccaatgtcctagcattacc
upper sequence: GLYMA17G11600.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G20350.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCTGGCAAGAAGGAAGATCTTATGCTGGCTGATAATACAGGCCTGACTCCGGCACAGCTTGCTTCTGATAAGAATCACAGACAAGTTGCTTTTTTCCTTgtaggtctttcataatcaacatagtttgatttgatcagtaatgccatttgaatggcagcttgctttccatcttttcaaaat---tttccctcccccaatgatt------
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GGCTGGAAAGAAAGAGGATTTGATGATTACTGACAAGACTGGGCTAACCCCTGCGCAACTTGCTGCTGAAAAGAATCACAGACAAGTTTCTTTTTTCCTTgtaggtatc---tgttttac-ttgtttg--ttgtgtagcaatatgtattca--tactgtttgatttg-atgctttcgtagtggctgtactgcttgcaataattagtagt
upper sequence: GLYMA17G11600.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 5
GGCTGGCAAGAAGGAAGATCTTATGCTGGCTGATAATACAGGCCTGACTCCGGCACAGCTTGCTTCTGATAAGAATCACAGACAAGTTGCTTTTTTCCTTgtaggtctttcataatcaacatagtttgatttgatcagtaatgccatttgaatggcagcttgctttccatcttttca---aaattttccctcccccaatgatt
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GGCTGGGAAGAAGGAGGACCTAATGATGACCGACAATACTGGCCTTACACCAGCGCAACTGGCTTCTGATAAGAATCATAGACAAGTTGCTTTTTTCCTTgtacgtgttccataaccgaaacactttaaattggttagtaatgtttctttgataagtagttcctttcaatagttatacctaaatataagtttttcaaaac---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208218636|gb|GE019692.1|GE019692EST: TAAGAATCACAGACAAGTTGTCTTTTTTCCTT GGAAATGCCCGAAGGTTGCTTGACAAACGCTGTGACGGGAACAGCCGCCTT
genomic: TAAGAATCACAGACAAGTTG-CTTTTTTCCTTgtaggtcttt ... taatgtgtagGGAAATGCCCGAAGGTTGCTTGACAAACGCTGTGACGGGAACAGCCGCCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTGGCAAGAAGGAAGATCTTATGCTGGCTGATAATACAGGCCTGACTCCGGCACAGCTTGCTTCTGATAAGAATCACAGACAAGTTGCTTTTTTCCTTgtaggtctttcataatcaacatagtttgatttgatcagtaatgccatttgaatggcagcttgctttccatcttttcaaaattttccctcccccaatgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccccc