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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTCATGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAGgtatttcaaactaaagaaagtttttttaattttattattatttttttactgttactttatcatgtattattacctgttgtattcaagataaactatttcttccttaattggaaactttaaataatttatactgcatgaccctcag

Basic information

species Glycine max
transcript GLYMA17G10610.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308343|gb|FK000895.1|FK000895
EST:     TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAG                         GTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
genomic: TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAGgtatttcaaa ... tgaccctcagGTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
EST: gi|151393862|gb|EV263737.1|EV263737
EST:     TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAG                         GTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
genomic: TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAGgtatttcaaa ... tgaccctcagGTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
EST: gi|7146726|gb|AW508648.1|AW508648
EST:     TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAG                         GTTTTGGATNTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
genomic: TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAGgtatttcaaa ... tgaccctcagGTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
EST: gi|10709984|gb|BF009708.1|BF009708
EST:     TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAA                         GTTTCGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTTCAAAGAGTTAC
genomic: TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAGgtatttcaaa ... tgaccctcagGTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
EST: gi|209702140|gb|BW677940.1|BW677940
EST:     TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAG                         GTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
genomic: TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAGgtatttcaaa ... tgaccctcagGTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
EST: gi|24205736|gb|BU964989.1|BU964989
EST:     TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAG                         GTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
genomic: TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAGgtatttcaaa ... tgaccctcagGTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
EST: gi|298165761|gb|HO008732.1|HO008732
EST:     TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAG                         GTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC
genomic: TGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAGgtatttcaaa ... tgaccctcagGTTTTGGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATCTCATGTTTGGAGAGATATCTGCTAAGGCAGCTCACATGTTATCACTTCCTAAGgtatttcaaactaaagaaagtttttttaattttattattatttttttactgttactttatcatgtattattacctgttgtattcaagataaactatttcttccttaattggaaactttaaataatttatactgcatgaccctcag

- - - - -  TTGGAG
- - - - - - TGGAGA
- - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - -  AGCTCA