1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACTGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGgtgatcattcccctttgtttctacaaatttttttaataaataaaagattgaggataaaaatatgaataaaaagaagtactagtaccataataatttcatg...
species | Glycine max |
transcript | GLYMA17G08300.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAG GTTTTAAGCATGAGCAGATTGGGCGGTGCAGCAGCTGTGGCACCCCTTGTTEST: gi|254343140|gb|GR859302.1|GR859302
genomic: TGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGgtgatcattc ... ttgattacagGTTTTAAGCATGAGCAGATTGGGCGGTGCAGCAGCTGTGGCACCCCTTGTT
EST: TGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAG GTTTTAAGCATGAGCAGATTGGGCGGTGCAGCAGCTGTGGCACCCCTTGTTEST: gi|22930251|gb|BU547390.1|BU547390
genomic: TGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGgtgatcattc ... ttgattacagGTTTTAAGCATGAGCAGATTGGGCGGTGCAGCAGCTGTGGCACCCCTTGTT
EST: GATGAGATCATCGATTATGTGAAGTTCCTACAGCTNNAAGTCAAG GTTTTAAGCATGAGCAGATTGGGCGGTGCAGCAGCTGTGGCACCCCTTGTT
genomic: GATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGgtgatcattc ... ttgattacagGTTTTAAGCATGAGCAGATTGGGCGGTGCAGCAGCTGTGGCACCCCTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGgtgatcattcccctttgtttctacaaatttttttaataaataaaagattgaggataaaaatatgaataaaaagaagtactagtaccataataatttcatg
- - - - - - - - GCTGGA
- - - - - - - - - - - - GAGATC
- - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaaa