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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTACACTTCTGAAGCCAGATACGAGCAGAGGTGGAGGTATGGATCCTGGTGGCTATGTAAAGGTTAAATGCATAGCTTGTGGACATCGAAATGAAAGgtaattgtcaacaaccaactatcccaaatgcttaagctcttaggtgaagatacaaatggttatatatgtacatattatatttctaacagtaatgttagtg...

Basic information

species Glycine max
transcript GLYMA17G05000.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05000.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 5'ss of exon 2
CTGCTACACTTCTGAAGCCAGATACGAGCAGAGGTGGAGGTATGGATCCTGGTGGCTATGTAAAGGTTAAATGCATAGCTTGTGGACATCGAAATGAAAGgtaattgtcaacaaccaactatcccaaatgcttaagctcttaggtgaagatacaaatggttatatatgtacatattatatttctaacagtaatgttagtg---
||||  |  |||| || |||||||| |||| ||| ||| | ||||| |||||||||||||| ||||| |||||| | |||||||| | || || ||| ||||||        | ||  ||       ||| | || || |||  |||   || |  ||  |   |  |   || | || || || | ||| |    | |    
CTGCATCTATTCTAAAACCAGATACCAGCAAAGGGGGACGGATGGACCCTGGTGGCTATGTGAAGGTGAAATGCTTGGCTTGTGGTCGTCCAAGTGATAGgtaaacaaatttacccttctgcagattatggtcaaactgtta--tgattttatatctgtctgctttggagtat-tcattttccttatagttaaaaaaatatga

upper sequence: GLYMA17G05000.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G153722_T01 (Zea mays), 5'ss of exon 2
CTGCTACACTTCTGAAGCCAGATAC---GAGCAGAGGTGGAGGTATGGATCCTGGTGGCTATGTAAAGGTTAAATGCATAGCTTGTGGACATCGAAATGAAAGgtaattgtcaacaaccaactatcccaaatgcttaagctcttaggtgaagatacaa--atggttatatatgtacatatt---atatttctaacagtaatgttagtg
   |  | ||| |||||||||||||    |||| ||| ||    ||||| |||||||||||||| ||||| |||||| |||||||||| || | || ||||||||||     | | |    | |      |||| | |    |||  |  | || |    ||| || || ||  | ||  |     ||   ||||  ||| ||||   
---CATCTCTTTTGAAGCCAGATACCACCAGCAAAGGCGGTCAGATGGACCCTGGTGGCTATGTTAAGGTGAAATGCTTAGCTTGTGGTCACCCAAGTGAAAGgtaaacaa-atctattttccaatttccatgcatcactatttaccttcatatgcctttatgattttacatcaatatgcttgagcatccataaccttaa-gtta---

upper sequence: GLYMA17G05000.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G33240.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGCTACACTTCTGAAGCCAGATACGAGCAGAGGTGGAGGTATGGATCCTGGTGGCTATGTAAAGGTTAAATGCATAGCTTGTGGACATCGAAATGAAAGgtaattgtcaacaaccaactatcccaaatgcttaagctcttaggtgaagatacaaatggttatatatgtacatattatatttctaacagtaatgttagtg
|||| || ||||| ||||||||||| || | | ||||||| |||||||| || || || || ||||||||||||||  ||||||||| ||| | ||| |||| | | |    ||||   |||     ||  ||    |  |   ||| | |     | | || |   |||||| |    |||| || |||| |  |  | 
CTGCAACGCTTCTCAAGCCAGATACAAGTAAAAGTGGAGGAATGGATCCAGGAGGATACGTGAAGGTTAAATGCATCCCTTGTGGACGTCGCAGTGAGAGgtgacttttttgaaccctttatatgggattttttttattgtgcttgatgtttgttctagatacagtggtacatttgggttttcaaatagtattcatgctt

upper sequence: GLYMA17G05000.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 2
CTGCTACACTTCTGAAGCCAGATACGAGCAGAGGTGGAGGTATGGATCCTGGTGGCTATGTAAAGGTTAAATGCATAGCTTGTGGACATCGAAATGAAAGgtaattgtcaacaaccaactatcccaaatgcttaagct----cttaggtgaagatacaaatggttatatatgtacatattatatttctaacagtaatgttagtg
|||| ||| |||| || |||||||| |||| ||||||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||| | ||| ||||||         |  || | |    |  |||||   |    | ||  | | ||| ||  | ||  | ||  ||  | | |  ||| |      |   |     
CTGCCACATTTCTAAAACCAGATACAAGCAAAGGTGGAGGGATGGATCCTGGTGGTTATGTGAAAGTTAAATGCATAGCTTGTGGGCATCGTAGTGAGAGgtaagctcattagaagaaatgtgatgatggcttacctttaatcctatctaatgatgcagctcgtactttaattagctctcacttttattgttagaccatc----

upper sequence: GLYMA17G05000.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S65_215V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGCTACACTTCTGAAGCCAGATACGAGCAGAGGTGGAGGTATGGATCCTGGTGGCTATGTAAAGGTTAAATGCATAGCTTGTGGACATCGAAATGAAAGgtaattgtcaacaaccaactatcccaaatgcttaagctcttaggtgaa-gatacaaat---ggttatatatgta--catattatatttctaacagtaatgttagtg
|||| |  ||  | || || ||||| || | ||| || ||||||||||| ||||||||||| || ||||| || ||||||| |||||  ||  | || ||||||| ||  ||       |   | ||||  | | |        ||||  || |  ||    | ||   | ||   ||  | |||||  ||| | |||  ||    
CTGCCAATCTAGTTAAACCGGATACAAGTAAAGGAGGTGGTATGGATCCAGGTGGCTATGTGAAAGTTAAGTGTATAGCTTCTGGACGGCGCGAAGATAGgtaatggt--actgt-gcttgagcaaaattttcatgtgtaattatgaataatcctgatttgagataagcacgtgatcacttgatattgttaataataaatttg---