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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTAAAGGAAAGCCATCGGAAGGCCTCTTGTACGGTCTCATATCTTCTAAATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatacctaataaactactttggcattcccccctctcaaattttattttatttaatttatttattaattaatatcattttag

Basic information

species Glycine max
transcript GLYMA17G04230.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719881|gb|AW307528.1|AW307528
EST:     AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG                         GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: gi|105633397|gb|DW246760.1|DW246760
EST:     ACATCAGTGAGGAG                         GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
genomic: ACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: gi|254323159|gb|GR835767.1|GR835767
EST:     AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG                         GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: gi|21479921|gb|BQ576604.1|BQ576604
EST:     AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG                         GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: gi|18692808|gb|BM521656.1|BM521656
EST:     AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG                         GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: gi|254323158|gb|GR835766.1|GR835766
EST:     AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG                         GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
EST: gi|11688853|gb|BF596529.1|BF596529
EST:     AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAG                         GAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT
genomic: AATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatac ... atcattttagGAATGGCCCCATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTTAAAGGAAAGCCATCGGAAGGCCTCTTGTACGGTCTCATATCTTCTAAATCATCTCCTCAGAGGGACGAAGGCAGCAAGTGGTACATCAGTGAGGAGgtactcatacctaataaactactttggcattcccccctctcaaattttattttatttaatttatttattaattaatatcattttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG