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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttacaaagaaagcttcttgaaccttttactcattacatacgtaaattaaaataaatgtgcaatatcaaatgcttcattagacttaatttatttcc...

Basic information

species Glycine max
transcript GLYMA17G04190.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04190.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g20100.1 (Oryza sativa), 5'ss of exon 5
AAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttacaaagaaagcttcttgaaccttttactcattacatacgtaaattaaaataaatgtgcaatatcaaatgcttcattagacttaatttatttcc
|||||||||||| || ||||| || || |||||||| ||||| ||| | ||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |||  |||| ||  ||| |  | ||  |   |||     | ||| |   |||   |  | |  | |    ||  |||  | |              
AAGCCATGACCGTGAAAGAGGCCGTGTTAGTCTTTCTACTAAAAAGCTTGAGCCGACACCTGGTGACATGATTCGCAATCCAAAGCTTGTTTTTGAGAAGgtaagtttgaaagcaatattccttgatctggt--ccatctggaatgtatac--aaactgacatactgttttctctgtctcaaaacag-------------

upper sequence: GLYMA17G04190.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G862107_T01 (Zea mays), 5'ss of exon 5
AAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttacaaagaaagcttcttgaaccttttactcattacatacgtaaattaaaataaatgtgcaatatcaaatgcttcattagacttaatttatttcc
 ||||||||||| || ||||| ||||| || ||||| ||||||||| | ||||| |||||||| |||||||| |||||||| |||||||| |||||||||||| |    ||  |||||  | |     | | |     |  ||| |    || |  |||       | ||   ||| ||  ||   || || |||     
GAGCCATGACCGTGAAAGAGGCCGAGTCAGCCTTTCTACTAAGAAGCTTGAGCCAACACCTGGTGACATGATCCGCAATCCCAAGCTTGTGTTTGAGAAGgtaagaataaacaaaagcaacat---tttctcatgtgctgaatatgc---tttaggtaagcaactgacat---atggtttcttttgctcaaattag----

upper sequence: GLYMA17G04190.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0077g00450.t01 (Vitis vinifera), 5'ss of exon 5
AAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgta--tgttacaaagaaagcttcttgaaccttttactcattacatacgtaaattaaaataaatgtgcaatatcaaatgcttcattagactta-atttatttcc
 ||||| ||||| |||||||| || |||||||| || |||||||||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||  | ||  | | ||| |||    |   || || |||||   || |  |||  ||||| | ||     | |    | |  |||||   || || ||| |  
GAGCCACGACCGTGAGAGAGGCCGTGTAAGTCTCTCAACTAAGAAGTTAGAACCTACCCCTGGAGACATGATTCGCAATCCAAAGCTTGTTTTTGAGAAGgtaattcttttagaaaaacctttcaaatagttgtaatcattttttatg--aatagaaatagaggttggtaacctctggttgtattagttatatatatatatt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31469766|gb|CD411794.1|CD411794
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|7796894|gb|AW782288.1|AW782288
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31465630|gb|CD407658.1|CD407658
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|120492190|gb|EH220357.1|EH220357
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|7234235|gb|AW569574.1|AW569574
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31307118|gb|CD392321.1|CD392321
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31459372|gb|CD401400.1|CD401400
EST:     GCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: GCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31307953|gb|CD393156.1|CD393156
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31312418|gb|CD397621.1|CD397621
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCCAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31460197|gb|CD402165.1|CD402165
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCTAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31461540|gb|CD403568.1|CD403568
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|120496890|gb|EH225057.1|EH225057
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|13481318|gb|BG510661.1|BG510661
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31463323|gb|CD405351.1|CD405351
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|15199690|gb|BI423960.1|BI423960
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAACT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31312300|gb|CD397503.1|CD397503
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31462339|gb|CD404367.1|CD404367
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|15202941|gb|BI425709.1|BI425709
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31469708|gb|CD411736.1|CD411736
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31460037|gb|CD402065.1|CD402065
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|11414052|gb|BF425992.1|BF425992
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31308252|gb|CD393455.1|CD393455
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31470914|gb|CD412942.1|CD412942
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31457447|gb|CD399475.1|CD399475
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31306284|gb|CD391487.1|CD391487
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31458368|gb|CD400396.1|CD400396
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31307868|gb|CD393071.1|CD393071
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31457183|gb|CD399211.1|CD399211
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|23732531|gb|BU764426.1|BU764426
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|10252976|gb|BE820742.1|BE820742
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|209699736|gb|BW655775.1|BW655775
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31309693|gb|CD394896.1|CD394896
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|120491477|gb|EH219644.1|EH219644
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31465686|gb|CD407714.1|CD407714
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|208223939|gb|GE020984.1|GE020984
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|120497033|gb|EH225200.1|EH225200
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|120491890|gb|EH220057.1|EH220057
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|7029450|gb|AW459233.1|AW459233
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|120492250|gb|EH220417.1|EH220417
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
EST: gi|31308426|gb|CD393629.1|CD393629
EST:     AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAG                         GCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT
genomic: AGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttaca ... tttgttatagGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGgtatgttacaaagaaagcttcttgaaccttttactcattacatacgtaaattaaaataaatgtgcaatatcaaatgcttcattagacttaatttatttcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataaa