1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGgtacgccttttggactggcaagcactagtgtgtgtgtaatagtttgtgctttgtggagcaaattctgttaagctcttgctgagcattgaatggataaatt...
species | Glycine max |
transcript | GLYMA17G03990.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAG AAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATAEST: gi|192321624|gb|FK013968.1|FK013968
genomic: GCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGgtacgccttt ... ttgttgacagAAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATA
EST: GCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAG AAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCA-EST: gi|13481495|gb|BG510838.1|BG510838
genomic: GCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGgtacgccttt ... ttgttgacagAAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCAA
EST: GCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAG AAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCAAEST: gi|213597925|gb|DB958306.1|DB958306
genomic: GCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGgtacgccttt ... ttgttgacagAAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCAA
EST: GCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAG AAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCAA
genomic: GCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGgtacgccttt ... ttgttgacagAAAGAACTTGCACAAGTTACATGTGATTGTGAACGACATATTGGGACTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGgtacgccttttggactggcaagcactagtgtgtgtgtaatagtttgtgctttgtggagcaaattctgttaagctcttgctgagcattgaatggataaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT