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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGTCTTTGAATTACATCCAAATTACAGGAATATACACCAAAAGATTTATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGgtagataaaaaaacataactgatgtgttactccattctccttccctttccattggatgaaaaacttaaaattggcttctttggagcag

Basic information

species Glycine max
transcript GLYMA17G03920.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 5
ATGTTGTCTTTGAATTACATCCAAATTACAGGAATATACACCAAAAGATTTATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGgtagataaaaaaacataact-gatgtgttactccattctccttccctttccattggatgaaaaacttaaaattggcttctttggagcag
||||||||||||| ||||||||||| ||||  ||||| ||||||||||| || || ||||| |||||||| || |||||||||||||| || || ||| ||||  |   ||| |||     |||   || |  | |  |     ||| |          |       ||  || | | ||||  ||   
ATGTTGTCTTTGATTTACATCCAAACTACAAAAATATTCACCAAAAGATCTACGTCCGCATCACCAACTTACCGGTTTATGATCAGATACGCAACATACGgtaacttggaaatcattgtcagatactttgcatcttattaaagtcctatttgggttccaagttcaccaatgtttggtgctttccag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193355308|gb|FK319893.1|FK319893
EST:     TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAG                         GCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG
genomic: TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGgtagataaaa ... tttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG
EST: gi|193421433|gb|FK388724.1|FK388724
EST:     TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAG                         GCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG
genomic: TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGgtagataaaa ... tttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG
EST: gi|193410920|gb|FK376403.1|FK376403
EST:     TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAG                         GCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG
genomic: TATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGgtagataaaa ... tttggagcagGCAGATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACCAGACG