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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGAAGACATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTgtgagtctcgtagatttccctatgtacatgcatatactctatcagtgcccttttaatttgtcttaaaaacaggcgtgccttttttcttaaaaaaaattgtctttgcaatgattttgttgtttgtataacaattgtttttagtttaattaacag

Basic information

species Glycine max
transcript GLYMA17G03310.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03310.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G11240.1 (Arabidopsis thaliana), 5'ss of exon 6
ATGGGAAGACATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTgtgagt-ctcgtagatttccctatgtacatgcatatactctatcagtgcccttttaatttgtcttaaaaacaggcgtgccttttttcttaaaaaaaattgtctttgcaatgattttgttgtttgtataacaattgtttttagtttaattaacag
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ATGGAAAAATATTAGTCACTGCATCTACTCAGTTGAAGACTTTTAACTGCTCTGATCTCAAGAAGATACAGAAGTTTACTGGTCATCCTgtgagtacctgta---ctgtttgtcagcat---tattttttatcgaccaggtttta--ttgtt-----aggatgctgcctctatgtcacacattcgaaggttatt--aacagtttttcatgttatatag-------------------------

upper sequence: GLYMA17G03310.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0077g01710.t01 (Vitis vinifera), 5'ss of exon 5
ATGGGAAGACATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTgtgagtctcgtagatttccctatgtacatgcatatactctatcagtgcccttttaatttgtcttaaaaacaggcgtgccttttttcttaaaaaaa---attgtctttgcaatgattttgttgtttgtataacaa-ttgtttttagtttaattaacag
|||| |||  ||| || |||||||| || ||||| |||||  | || | |||| ||||||| ||||| || ||||| |||||||||||||||||||   |  | ||   ||| |   |  ||  | | ||      ||  ||| || |   || ||||||  |   |||  | | |  |  |||    || |||||   ||  || ||||  | ||  |  || || | | |    | ||||||||
ATGGAAAGGTATTGGCGACTGCAGCTGCTCAATTAAAGATCCTCAATTCTTCTGATCACAAGAAGATACAGAAGTTTTCTGGTCATCCTgtgagtcctattcagtttt-tatatttct-tatcaagtttact----cctatttcatct-cattcaaaacaatca-acctgatgtgtggagtaaactggttatcttttttatt-ttctgttcatagttgagtaaattatctcttcactcattaacag