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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAgtatgttgccctaatggaaccttcaaattttgatttgaaaaaaagaaaaagtttgatggtatgggaatggttgaagtgtcagtatttagtattattgttggtctactgacag

Basic information

species Glycine max
transcript GLYMA17G00490.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00490.2 (Glycine max), 5'ss of exon 5
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 5'ss of exon 8
-----GCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAgtat-gttgccctaatggaaccttcaaattttgatttgaaaaaaagaaaaagtttgatggtatgggaatggttgaagtgtcagtatttagt-attattgttggtctactgacag----------------------------------------------------
     ||||||||||||||||||   ||| ||||||||||||||||||||||||| | ||     |  | ||  | |     |||   ||   |  |  | | | | ||    | || | ||  |  |  |      ||| | | |    |  | ||| | ||   |                                                    
GCTAGGCACTGGGATTCCTTCTATGATTTCTACAGGAACACAACTGATAACAAgtttagtctttatctttgagacatttttgtttttcttatcattagtacacattatgtgtctttgtgcataataaacatacttacattcaattacctgtcatcgtcaagtgtatgcattacctgtgtttgtcctttcacatgcttaacgatttccggctaattttag

upper sequence: GLYMA17G00490.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 9
-----GCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAgtatgtt--gccctaatggaaccttcaaattttgatttgaaaaaaagaaaaagtttgatggtatgggaatggttgaagtgtcagtatttagtattattgttggtctactgacag-------------------------------------------------------
     ||||||||||||||| ||||  || || |||||||| |||||||||||||||| |       | | || | ||     | |  ||  ||  |||     |  ||  |    ||  |    |  |  ||| | |||||  | ||||   ||   ||     |                                                        
GCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAAgtatggtcaatatcatttgaccgtttctgatctctttacaatgaaattcttatatttttaaattgttatcaatcaacatgttattattttct-ttatccatgaaatatgttgaatcgtttgaaatgcttgaacttgtcgcattctaaagacgctgttgatttatcttag