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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttacaaaggaattttttatactatggaaaattgatatgacaactccatgttgaccctccattcaaaatgtcagtttagttcttttatcctgttgg...

Basic information

species Glycine max
transcript GLYMA17G00470.4
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00470.4 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 5'ss of exon 6
CCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttacaaaggaattttttatactatggaaaattgatatgaca-actccatgttgaccctccattcaa-aatgtcagtttagttcttttatcctgttgg
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CCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCACCGgttggtc-cattatcatctttaataatttttctcatttctctgctatgcttcactccacgcctagaggcaagaaaggaaagggggttgggtggaatcaata-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5687959|gb|AI940974.1|AI940974
EST:     TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCA                         GCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
genomic: TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttaca ... ttgattgaagGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
EST: gi|4306303|gb|AI443885.1|AI443885
EST:     GTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCA                         GCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
genomic: GTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttaca ... ttgattgaagGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
EST: gi|209699367|gb|BW664086.1|BW664086
EST:     TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCA                         GCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGA
genomic: TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttaca ... ttgattgaagGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGA
EST: gi|208211182|gb|GE013965.1|GE013965
EST:     TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCA                         GCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
genomic: TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttaca ... ttgattgaagGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
EST: gi|208029666|gb|GD832044.1|GD832044
EST:     TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCA                         GCTGAGGAGGCTGCAATTT
genomic: TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttaca ... ttgattgaagGCTGAGGAGGCTGCAATTT
EST: gi|12773474|gb|BG238401.1|BG238401
EST:     TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCA                         GCTGAGGAGGCTGCAATNTCTGCACTAAAGAGAGCTNTGGGTGCTTTGAAC
genomic: TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttaca ... ttgattgaagGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
EST: gi|5687877|gb|AI940856.1|AI940856
EST:     TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCA                         GCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
genomic: TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttaca ... ttgattgaagGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
EST: gi|7795385|gb|AW780844.1|AW780844
EST:     TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCA                         GCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
genomic: TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttaca ... ttgattgaagGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
EST: gi|208268375|gb|GE067690.1|GE067690
EST:     TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCA                         GCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
genomic: TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttaca ... ttgattgaagGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
EST: gi|207794100|gb|GD763906.1|GD763906
EST:     TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCA                         GCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC
genomic: TTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAgtaagttaca ... ttgattgaagGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAAC