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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTGCTCTTGAAGGGGATGAGGAGTTGACACCACTTGGGCATCATCTGGCAAAACTTCCTGTGGATGTGTTAATTGGGAAGgtgctcaccaaatttttctttcctcttatcttcaaaggtttaaatttaatgtttgtttttcaatgctgctatatctttaagaatttattaatttttatac...

Basic information

species Glycine max
transcript GLYMA17G00440.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00440.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G58060.1 (Arabidopsis thaliana), 5'ss of exon 25
GTTGGTGCTCTTGAAGGGGATGAGGAGTTGACACCACTTGGGCATCATCTGGCAAAACTTCCTGTGGATGTGTTAATTGGGAAGgtgctcaccaaatttttctttcctcttatcttcaaaggtttaaatttaatgt-ttgtttttcaatgctgctatatctttaagaatttattaatttttatac--
||||||||| ||||||||||||| |||||||||||||||||||||||| | || ||||||||||| |||||||||||||| |||||   |  ||    |  | || || ||    | |||  |   | ||  | |  ||| |     |  ||  ||||| | |   | |    |  |    | |   
GTTGGTGCTGTTGAAGGGGATGAAGAGTTGACACCACTTGGGCATCATTTAGCCAAACTTCCTGTTGATGTGTTAATTGGAAAGgtttgcgtcag---taacattactgttgcactaaaatttccgagttggaggccttggtcactgactctcatatatatgttttattcctctcctcacaacatct

upper sequence: GLYMA17G00440.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G58050.1 (Arabidopsis thaliana), 5'ss of exon 25
GTTGGTGCTCTTGAAGGGGATGAGGAGTTGACACCACTTGGGCATCATCTGGCAAAACTTCCTGTGGATGTGTTAATTGGGAAGgtgctcaccaaatttttctttcctcttatcttcaaag--gtttaaatttaatgtttgtttttcaatgctgctatatctttaagaatttattaatttttatac
|| || |||||||||||||| || |||||||||||||| || |||||| | |||||||||||||| ||| |||||||||| |||||   |  ||      || ||  | |  |  | || |  | | |||  || |||||  || |||   || | |  | || || |||  |             
GTCGGCGCTCTTGAAGGGGACGAAGAGTTGACACCACTAGGACATCATTTAGCAAAACTTCCTGTTGATTTGTTAATTGGAAAGgtttgcttcagtaacatcattgttgtactaataaaggccgctcaaacata-tgttttgttatcatcactac-accttttaaataatgcag------------

upper sequence: GLYMA17G00440.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g00800.t01 (Vitis vinifera), 5'ss of exon 23
GTTGGTGCTCTTGAAGGGGATGAGGAGTTGACACCACTTGGGCATCATCTGGCAAAACTTCCTGTGGATGTGTTAATTGGGAAGgtgctcaccaaatttttctttcctcttatcttcaaaggtt---taaatttaatgtttgtttttcaatgctgctatatct--ttaagaatttattaatttttatac
||||||||| ||||||||||||| |||||||| || |||||||||||| |||| ||||||||||| |||||||||||||| ||||||  || ||  |  |||| ||||  ||| ||||||||||   ||| | || |  | |    ||| ||||  |||   |  ||  |||| || |   |       
GTTGGTGCTATTGAAGGGGATGAAGAGTTGACGCCTCTTGGGCATCATTTGGCTAAACTTCCTGTTGATGTGTTAATTGGAAAGgtgtgcatcatttacttctgtccttctat-ttcaaaggttaaataattgtagtactgggaactcattgctaatattattgatttggaatctaatgtctggg----