1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaattttctagtagtgtgatgtgatatagatttcataatattttacttgtgatagatttcagaatatatttctatgttgttataaagtgattcac...
species | Glycine max |
transcript | GLYMA17G00250.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGAEST: gi|151409763|gb|EV279571.1|EV279571
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGAEST: gi|192326423|gb|FK015925.1|FK015925
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGAEST: gi|298166707|gb|HO010146.1|HO010146
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGAEST: gi|58022692|gb|CX709433.1|CX709433
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGAEST: gi|4396313|gb|AI495310.1|AI495310
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCEST: gi|254326666|gb|GR832818.1|GR832818
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTC
EST: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGAEST: gi|298178229|gb|HO023964.1|HO023964
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGAEST: gi|7795909|gb|AW781306.1|AW781306
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGA
EST: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG GCTATATGTGAAGACGAGCGTGTGCAGTATEST: gi|298184274|gb|HO029487.1|HO029487
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTAT
EST: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG GCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAAC
genomic: CTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaatt ... cgatttgcagGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGgtttgtaattttctagtagtgtgatgtgatatagatttcataatattttacttgtgatagatttcagaatatatttctatgttgttataaagtgattcac
- - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG